Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023800.1-P | Field mustard | nucleus | 99.74 | 94.97 |
| CDY46606 | Canola | nucleus | 92.61 | 91.64 |
| CDY46607 | Canola | nucleus | 88.92 | 90.84 |
| CDY10674 | Canola | nucleus | 82.32 | 80.21 |
| CDY10311 | Canola | nucleus | 81.53 | 79.64 |
| CDX94887 | Canola | nucleus | 55.41 | 77.78 |
| AT3G22830.1 | Thale cress | nucleus | 83.11 | 77.59 |
| CDX94884 | Canola | nucleus | 57.26 | 75.61 |
| CDX92958 | Canola | nucleus | 67.55 | 74.42 |
| Solyc06g053960.2.1 | Tomato | nucleus | 25.07 | 66.9 |
| KRG91367 | Soybean | nucleus | 52.77 | 54.64 |
| KRH31657 | Soybean | nucleus | 48.28 | 54.3 |
| Solyc09g082670.2.1 | Tomato | nucleus | 50.66 | 53.93 |
| PGSC0003DMT400016511 | Potato | nucleus | 51.19 | 53.59 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 40.9 | 53.45 |
| PGSC0003DMT400041944 | Potato | nucleus | 47.76 | 52.62 |
| KRH35452 | Soybean | nucleus | 50.13 | 51.91 |
| CDX95313 | Canola | nucleus | 35.88 | 50.75 |
| CDX90626 | Canola | nucleus | 35.09 | 49.44 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 43.27 | 49.1 |
| CDY29054 | Canola | nucleus | 34.04 | 48.68 |
| Os10t0419300-00 | Rice | nucleus | 45.91 | 48.6 |
| Zm00001d032923_P002 | Maize | nucleus | 45.12 | 47.9 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 42.74 | 47.51 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 42.48 | 47.21 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 43.8 | 47.16 |
| EER94213 | Sorghum | nucleus | 44.85 | 46.96 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 37.99 | 46.75 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 41.95 | 46.63 |
| CDX90627 | Canola | nucleus | 35.09 | 46.34 |
| EER93298 | Sorghum | nucleus | 41.16 | 46.02 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 41.42 | 45.64 |
| EER95940 | Sorghum | nucleus | 44.33 | 45.16 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 44.06 | 44.89 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 39.31 | 44.74 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 43.01 | 44.29 |
| CDY14893 | Canola | nucleus | 30.61 | 44.27 |
| Zm00001d018941_P001 | Maize | nucleus | 43.8 | 44.27 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 41.69 | 44.13 |
| Os03t0161900-02 | Rice | nucleus | 44.06 | 44.06 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 41.95 | 43.68 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 39.84 | 43.64 |
| Os07t0178600-01 | Rice | nucleus | 42.74 | 43.55 |
| CDY11470 | Canola | nucleus | 32.72 | 43.51 |
| CDX76693 | Canola | nucleus | 32.72 | 43.51 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 39.84 | 43.39 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 39.58 | 42.49 |
| EER95463 | Sorghum | nucleus | 43.8 | 42.46 |
| Zm00001d027757_P001 | Maize | nucleus | 42.48 | 41.93 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 39.58 | 40.43 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 43.54 | 40.05 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 42.74 | 40.0 |
| CDY43158 | Canola | nucleus | 32.19 | 39.87 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 43.8 | 39.71 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 43.27 | 39.71 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 39.31 | 39.52 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 38.52 | 39.25 |
| CDY21503 | Canola | nucleus | 35.62 | 38.68 |
| Zm00001d033987_P001 | Maize | nucleus | 37.2 | 38.01 |
| EER90889 | Sorghum | nucleus | 37.2 | 38.01 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 39.31 | 37.53 |
| CDX83217 | Canola | nucleus | 36.15 | 36.73 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 38.79 | 33.95 |
| CDX78797 | Canola | nucleus | 37.99 | 33.49 |
| CDY60785 | Canola | nucleus | 38.26 | 33.18 |
| CDX85486 | Canola | nucleus | 35.62 | 30.54 |
| CDY38085 | Canola | nucleus | 35.36 | 30.52 |
| CDY13041 | Canola | nucleus | 24.54 | 30.29 |
| CDX93024 | Canola | nucleus | 24.27 | 30.07 |
| CDX77420 | Canola | nucleus | 24.8 | 29.94 |
| CDY50608 | Canola | nucleus | 24.8 | 29.84 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 40.9 | 29.75 |
| CDY58547 | Canola | nucleus | 35.62 | 29.74 |
| CDY39545 | Canola | nucleus | 24.54 | 29.62 |
| CDY09259 | Canola | nucleus | 28.23 | 29.56 |
| CDX76506 | Canola | nucleus | 28.23 | 29.23 |
| CDX93842 | Canola | nucleus | 36.94 | 28.75 |
| CDY01288 | Canola | nucleus | 37.2 | 28.66 |
| CDX92026 | Canola | nucleus | 33.77 | 28.57 |
| CDY23108 | Canola | nucleus | 25.59 | 28.53 |
| CDY28731 | Canola | nucleus | 32.72 | 28.44 |
| CDX74228 | Canola | nucleus | 34.04 | 28.35 |
| CDY16977 | Canola | nucleus | 32.19 | 27.66 |
| CDX99415 | Canola | nucleus | 27.97 | 27.6 |
| CDY69818 | Canola | nucleus | 28.23 | 27.44 |
| CDX70290 | Canola | nucleus | 26.12 | 27.27 |
| CDY01562 | Canola | nucleus | 28.23 | 27.23 |
| CDX69418 | Canola | nucleus | 34.56 | 26.9 |
| CDY10361 | Canola | nucleus | 28.23 | 26.68 |
| Zm00001d034433_P003 | Maize | nucleus | 41.16 | 25.12 |
| CDY44649 | Canola | nucleus | 29.55 | 23.58 |
| CDY12723 | Canola | nucleus | 28.23 | 22.53 |
| CDY01180 | Canola | nucleus | 27.7 | 22.01 |
| CDX78902 | Canola | nucleus | 26.91 | 19.73 |
| CDY43157 | Canola | cytosol | 2.64 | 11.11 |
| CDX84097 | Canola | nucleus | 6.33 | 8.92 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078H9Q1 | UniProt:A0A078H9Q1 | EnsemblPlants:CDY34229 | ProteinID:CDY34229 |
| ProteinID:CDY34229.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00056228001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF139 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EE0C15 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaA01g24460DBnaA01g24460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9Q1]
Coordinates
chrLK032331:-:107247..109083
Molecular Weight (calculated)
43924.4 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.961
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSYRFIKE EFPRGFNDSP SPPSSYLYTT SMAPNDPTTT LSSPQPIEGL HESGPPPFLT KTYDLVEDSR TNHVVSWSQA NNSFIVWDPE SFSMTLLPIF
101: FKHNNFSSFV RQLNTYGFRK VNPDRWEFAN EGFLRGQKHL LKTIRRRKTS NNNQMQPPQS SSQLQSLDNC CIEVGKYGLD GEMDSLRRDK QVLMMELVKV
201: RQQQQSTKMD LTLLEDKLKK TESKQKQMMS FLARAMQNPD FLQQLIEQKE KRKNTEEAID KKRQRPIDQG KRHDAGSSSA FFDMKQETYG DMSELDRLAM
301: HIQGLGDQCN KEDVVLDVGK GNEEEQHKER YQDENNEIYG EGFWEDLLNE GQNFDLQGDD EENVDVLIEQ LGYLGSSRH
101: FKHNNFSSFV RQLNTYGFRK VNPDRWEFAN EGFLRGQKHL LKTIRRRKTS NNNQMQPPQS SSQLQSLDNC CIEVGKYGLD GEMDSLRRDK QVLMMELVKV
201: RQQQQSTKMD LTLLEDKLKK TESKQKQMMS FLARAMQNPD FLQQLIEQKE KRKNTEEAID KKRQRPIDQG KRHDAGSSSA FFDMKQETYG DMSELDRLAM
301: HIQGLGDQCN KEDVVLDVGK GNEEEQHKER YQDENNEIYG EGFWEDLLNE GQNFDLQGDD EENVDVLIEQ LGYLGSSRH
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.