Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009515.1-P | Field mustard | nucleus | 88.78 | 98.07 |
| CDX70290 | Canola | nucleus | 88.78 | 98.07 |
| AT5G03720.1 | Thale cress | nucleus | 82.29 | 80.1 |
| KRH67848 | Soybean | nucleus | 44.89 | 42.55 |
| KRH32651 | Soybean | nucleus | 47.88 | 41.74 |
| KRH20029 | Soybean | nucleus | 46.88 | 41.41 |
| PGSC0003DMT400006917 | Potato | nucleus | 44.64 | 36.02 |
| CDY29054 | Canola | nucleus | 23.69 | 35.85 |
| Solyc09g009100.2.1 | Tomato | nucleus | 45.39 | 35.76 |
| CDX90626 | Canola | nucleus | 23.69 | 35.32 |
| CDX95313 | Canola | nucleus | 23.44 | 35.07 |
| CDY43158 | Canola | nucleus | 26.68 | 34.97 |
| VIT_08s0007g03900.t01 | Wine grape | nucleus | 45.64 | 34.46 |
| CDY14893 | Canola | nucleus | 21.7 | 33.21 |
| CDX90627 | Canola | nucleus | 23.44 | 32.75 |
| CDX76693 | Canola | nucleus | 23.19 | 32.63 |
| CDY11470 | Canola | nucleus | 22.94 | 32.28 |
| CDX94887 | Canola | nucleus | 20.45 | 30.37 |
| CDX77420 | Canola | nucleus | 23.69 | 30.25 |
| CDY39545 | Canola | nucleus | 23.69 | 30.25 |
| CDX93024 | Canola | nucleus | 22.94 | 30.07 |
| CDY21503 | Canola | nucleus | 25.94 | 29.8 |
| CDY50608 | Canola | nucleus | 23.19 | 29.52 |
| CDX94884 | Canola | nucleus | 20.95 | 29.27 |
| CDY13041 | Canola | nucleus | 21.7 | 28.34 |
| CDY34229 | Canola | nucleus | 26.68 | 28.23 |
| GSMUA_Achr5P15900_001 | Banana | nucleus | 38.4 | 28.15 |
| CDX83217 | Canola | nucleus | 25.69 | 27.61 |
| CDY46607 | Canola | nucleus | 25.19 | 27.22 |
| CDY46606 | Canola | nucleus | 25.94 | 27.15 |
| CDX78797 | Canola | nucleus | 28.68 | 26.74 |
| CDY10674 | Canola | nucleus | 25.94 | 26.74 |
| CDY38085 | Canola | nucleus | 29.18 | 26.65 |
| CDX85486 | Canola | nucleus | 28.93 | 26.24 |
| CDY60785 | Canola | nucleus | 28.43 | 26.09 |
| CDY10311 | Canola | nucleus | 25.19 | 26.03 |
| CDY23108 | Canola | nucleus | 21.95 | 25.88 |
| CDY09259 | Canola | nucleus | 22.94 | 25.41 |
| CDX92958 | Canola | nucleus | 21.7 | 25.29 |
| CDX76506 | Canola | nucleus | 22.94 | 25.14 |
| CDX92026 | Canola | nucleus | 27.68 | 24.78 |
| CDX99415 | Canola | nucleus | 23.69 | 24.74 |
| CDY58547 | Canola | nucleus | 27.93 | 24.67 |
| CDX74228 | Canola | nucleus | 27.68 | 24.4 |
| CDY16977 | Canola | nucleus | 26.68 | 24.26 |
| CDY28731 | Canola | nucleus | 26.18 | 24.08 |
| CDX93842 | Canola | nucleus | 28.93 | 23.82 |
| CDY01288 | Canola | nucleus | 28.93 | 23.58 |
| CDX69418 | Canola | nucleus | 28.18 | 23.2 |
| CDY01562 | Canola | nucleus | 22.44 | 22.9 |
| CDY69818 | Canola | nucleus | 22.19 | 22.82 |
| CDY44649 | Canola | nucleus | 23.19 | 19.58 |
| CDY01180 | Canola | nucleus | 20.95 | 17.61 |
| CDY12723 | Canola | nucleus | 20.7 | 17.47 |
| CDX78902 | Canola | nucleus | 22.44 | 17.41 |
| CDX84097 | Canola | nucleus | 4.74 | 7.06 |
| CDY43157 | Canola | cytosol | 1.0 | 4.44 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078FAB7 | UniProt:A0A078FAB7 | EnsemblPlants:CDY10361 | ProteinID:CDY10361 |
| ProteinID:CDY10361.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00032261001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF164 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EB68E8 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaCnng02620DBnaCnng02620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAB7]
Coordinates
chrLK032003:+:38221..40385
Molecular Weight (calculated)
45027.0 Da
IEP (calculated)
4.750
GRAVY (calculated)
-0.640
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPEKDGVSI PTPLSIPIST RPESVPLHVD TDVASPLPMP LDILHGNPIP PFLSKTFDLV DDPSLDPVIS WGPTGASFVV WDPVEFARII LPRNFKHNNF
101: SSFVRQLNTY GFRKIDTDKW EFANEAFLRG QKHLLKNIHR RRSPQSNQAC SSSITSHQSQ GSPTEVGEEI EMLRKERRAL MEEMVELQQQ NRGTARHVDT
201: VNQKLKAAEQ RQKQMLSFLA KLFQNPGFLD RLKSLKGEGG GLGFKKARKK FIKHSPTGGE IVKYEADDWE RLLMSEEEDT ENILPSNQGM TSTDPKGKNL
301: MNPSGEETMN QDYFLPFPTP EGLIKQEETW SMGFDTTIPS FSNEDVWGNT MDYNVAEFGS VPETSSGGCL PDVCWEQFAA GMTETGFNWP PGDDTTPMDD
401: P
101: SSFVRQLNTY GFRKIDTDKW EFANEAFLRG QKHLLKNIHR RRSPQSNQAC SSSITSHQSQ GSPTEVGEEI EMLRKERRAL MEEMVELQQQ NRGTARHVDT
201: VNQKLKAAEQ RQKQMLSFLA KLFQNPGFLD RLKSLKGEGG GLGFKKARKK FIKHSPTGGE IVKYEADDWE RLLMSEEEDT ENILPSNQGM TSTDPKGKNL
301: MNPSGEETMN QDYFLPFPTP EGLIKQEETW SMGFDTTIPS FSNEDVWGNT MDYNVAEFGS VPETSSGGCL PDVCWEQFAA GMTETGFNWP PGDDTTPMDD
401: P
001: MSPKKDAVSK PTPISVPVSR RSDIPGSLYV DTDMGFSGSP LPMPLDILQG NPIPPFLSKT FDLVDDPTLD PVISWGLTGA SFVVWDPLEF ARIILPRNFK
101: HNNFSSFVRQ LNTYGFRKID TDKWEFANEA FLRGKKHLLK NIHRRRSPQS NQTCCSSTSQ SQGSPTEVGG EIEKLRKERR ALMEEMVELQ QQSRGTARHV
201: DTVNQRLKAA EQRQKQLLSF LAKLFQNRGF LERLKNFKGK EKGGALGLEK ARKKFIKHHQ QPQDSPTGGE VVKYEADDWE RLLMYDEETE NTKGLGGMTS
301: SDPKGKNLMY PSEEEMSKPD YLMSFPSPEG LIKQEETTWS MGFDTTIPSF SNTDAWGNTM DYNDVSEFGF AAETTSDGLP DVCWEQFAAG ITETGFNWPT
401: GDDDDNTPMN DP
101: HNNFSSFVRQ LNTYGFRKID TDKWEFANEA FLRGKKHLLK NIHRRRSPQS NQTCCSSTSQ SQGSPTEVGG EIEKLRKERR ALMEEMVELQ QQSRGTARHV
201: DTVNQRLKAA EQRQKQLLSF LAKLFQNRGF LERLKNFKGK EKGGALGLEK ARKKFIKHHQ QPQDSPTGGE VVKYEADDWE RLLMYDEETE NTKGLGGMTS
301: SDPKGKNLMY PSEEEMSKPD YLMSFPSPEG LIKQEETTWS MGFDTTIPSF SNTDAWGNTM DYNDVSEFGF AAETTSDGLP DVCWEQFAAG ITETGFNWPT
401: GDDDDNTPMN DP
Arabidopsis Description
HSFA3HSFA3 [Source:UniProtKB/TrEMBL;Acc:A0A178UHR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.