Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023258.1-P | Field mustard | nucleus | 98.97 | 98.97 |
| CDY01288 | Canola | nucleus | 97.33 | 96.34 |
| AT1G32330.1 | Thale cress | nucleus | 76.39 | 76.7 |
| CDX84097 | Canola | nucleus | 40.04 | 72.49 |
| CDY44649 | Canola | nucleus | 67.56 | 69.26 |
| CDY43158 | Canola | nucleus | 34.09 | 54.25 |
| KRH74387 | Soybean | nucleus | 50.51 | 50.2 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 51.13 | 50.2 |
| KRH39566 | Soybean | nucleus | 50.31 | 49.0 |
| CDX78797 | Canola | nucleus | 42.51 | 48.14 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 43.33 | 48.06 |
| KRH07474 | Soybean | nucleus | 50.31 | 48.04 |
| CDY60785 | Canola | nucleus | 42.3 | 47.14 |
| PGSC0003DMT400046000 | Potato | nucleus | 47.64 | 45.67 |
| Solyc08g005170.2.1 | Tomato | nucleus | 47.64 | 44.02 |
| Os03t0854500-01 | Rice | nucleus | 44.97 | 43.28 |
| CDY14893 | Canola | nucleus | 23.2 | 43.13 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 37.58 | 42.96 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 45.79 | 42.8 |
| CDX85486 | Canola | nucleus | 38.81 | 42.76 |
| CDY38085 | Canola | nucleus | 38.4 | 42.6 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 45.38 | 42.34 |
| CDY58547 | Canola | nucleus | 39.43 | 42.29 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 45.59 | 41.97 |
| EER93074 | Sorghum | nucleus | 45.38 | 41.94 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 41.68 | 41.68 |
| Solyc08g076590.2.1 | Tomato | nucleus | 41.68 | 41.43 |
| Zm00001d034886_P001 | Maize | nucleus | 44.56 | 41.18 |
| PGSC0003DMT400038381 | Potato | nucleus | 42.09 | 41.16 |
| CDX74228 | Canola | nucleus | 38.4 | 41.1 |
| CDX95313 | Canola | nucleus | 22.59 | 41.04 |
| CDX92026 | Canola | nucleus | 37.58 | 40.85 |
| CDX90626 | Canola | nucleus | 21.97 | 39.78 |
| CDY29054 | Canola | nucleus | 21.56 | 39.62 |
| CDY21503 | Canola | nucleus | 27.72 | 38.68 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 45.17 | 38.33 |
| CDY28731 | Canola | nucleus | 34.29 | 38.3 |
| CDX69418 | Canola | nucleus | 38.19 | 38.19 |
| CDX94887 | Canola | nucleus | 21.15 | 38.15 |
| CDY16977 | Canola | nucleus | 34.29 | 37.87 |
| CDX90627 | Canola | nucleus | 22.18 | 37.63 |
| Zm00001d012823_P001 | Maize | nucleus | 42.71 | 37.41 |
| CDY34229 | Canola | nucleus | 28.75 | 36.94 |
| CDX76693 | Canola | nucleus | 21.56 | 36.84 |
| CDY10674 | Canola | nucleus | 29.36 | 36.76 |
| CDX83217 | Canola | nucleus | 27.72 | 36.19 |
| CDY11470 | Canola | nucleus | 21.15 | 36.14 |
| CDY10311 | Canola | nucleus | 28.34 | 35.57 |
| CDY46606 | Canola | nucleus | 27.52 | 34.99 |
| CDY46607 | Canola | nucleus | 26.49 | 34.77 |
| CDX94884 | Canola | nucleus | 20.33 | 34.49 |
| CDY13041 | Canola | nucleus | 21.15 | 33.55 |
| CDX93024 | Canola | nucleus | 20.53 | 32.68 |
| CDX92958 | Canola | nucleus | 23.0 | 32.56 |
| CDX70290 | Canola | nucleus | 23.82 | 31.96 |
| CDY39545 | Canola | nucleus | 20.53 | 31.85 |
| CDX77420 | Canola | nucleus | 20.53 | 31.85 |
| CDY50608 | Canola | nucleus | 20.53 | 31.75 |
| CDY23108 | Canola | nucleus | 21.97 | 31.47 |
| CDY09259 | Canola | nucleus | 22.79 | 30.66 |
| CDX76506 | Canola | nucleus | 22.18 | 29.51 |
| CDY10361 | Canola | nucleus | 23.82 | 28.93 |
| CDX99415 | Canola | nucleus | 22.38 | 28.39 |
| CDY69818 | Canola | nucleus | 22.38 | 27.95 |
| CDY01562 | Canola | nucleus | 22.18 | 27.48 |
| CDY12723 | Canola | nucleus | 24.02 | 24.63 |
| CDY01180 | Canola | nucleus | 23.41 | 23.9 |
| CDX78902 | Canola | nucleus | 21.97 | 20.7 |
| CDY43157 | Canola | cytosol | 2.26 | 12.22 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | MapMan:26.4.2.1 | GO:A0A078DY53 | EnsemblPlants:CDX93842 | ProteinID:CDX93842 |
| ProteinID:CDX93842.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00156634001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF162 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EDCE12 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaA09g24420D
Coordinates
chrLK031877:+:1424395..1427311
Molecular Weight (calculated)
54445.6 Da
IEP (calculated)
4.411
GRAVY (calculated)
-0.719
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRGNSTKGG SVTMESTEIQ PSPQPQPVAV LTGNAPPPFL SKTYDMVDDP ATDSIVSWSA NNNSFIVWDP PQFAKDLLPK NFKHNNFSSF VRQLNTYGFR
101: KVDPDKWEFA NEGFLRGQKH LLKTITRRKP AHGHGPQQSQ HSIGQNSSVS SCVEVGKFGL KEEVERLKRD KNVLMQELVR LRQQQQSTDN QLQTMVQRLQ
201: GMENRQQQLM SFLAKAVQSP HFLSQFLQQQ NQQNEGSRRI SDTSKKRRFK RDGIVSNNKD SASPDGQIVK YQPPMHEQAK AMFSQLMKME PYKAGDDGFL
301: LGNGTSTTTS TEGTEMEISA NNITGISLHE MPIASEIQSS SSPSGATPEN VTVAEFPTPD EAIPSPDDLS LPEFADMLQE NIAEVPPENF LETNMEDLSP
401: ILDSDLFNND DLPFDIDDIL RDPDLEPTVD DYASLFQDIL MSSPVPDDME VTPVDVTTKD GETEQKQMDN LTQQMGLLSP ETIDLSR
101: KVDPDKWEFA NEGFLRGQKH LLKTITRRKP AHGHGPQQSQ HSIGQNSSVS SCVEVGKFGL KEEVERLKRD KNVLMQELVR LRQQQQSTDN QLQTMVQRLQ
201: GMENRQQQLM SFLAKAVQSP HFLSQFLQQQ NQQNEGSRRI SDTSKKRRFK RDGIVSNNKD SASPDGQIVK YQPPMHEQAK AMFSQLMKME PYKAGDDGFL
301: LGNGTSTTTS TEGTEMEISA NNITGISLHE MPIASEIQSS SSPSGATPEN VTVAEFPTPD EAIPSPDDLS LPEFADMLQE NIAEVPPENF LETNMEDLSP
401: ILDSDLFNND DLPFDIDDIL RDPDLEPTVD DYASLFQDIL MSSPVPDDME VTPVDVTTKD GETEQKQMDN LTQQMGLLSP ETIDLSR
001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR
Arabidopsis Description
HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.