Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023258.1-P | Field mustard | nucleus | 77.11 | 76.8 |
| CDX93842 | Canola | nucleus | 76.7 | 76.39 |
| CDY01288 | Canola | nucleus | 76.29 | 75.2 |
| CDX84097 | Canola | nucleus | 38.14 | 68.77 |
| Bra035507.1-P | Field mustard | nucleus | 56.91 | 64.64 |
| CDY44649 | Canola | nucleus | 61.44 | 62.74 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 55.88 | 54.64 |
| KRH74387 | Soybean | nucleus | 53.2 | 52.65 |
| KRH39566 | Soybean | nucleus | 53.61 | 52.0 |
| KRH07474 | Soybean | nucleus | 52.99 | 50.39 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 44.95 | 49.66 |
| PGSC0003DMT400046000 | Potato | nucleus | 51.55 | 49.21 |
| Solyc08g005170.2.1 | Tomato | nucleus | 51.75 | 47.63 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 40.82 | 46.48 |
| Os03t0854500-01 | Rice | nucleus | 47.01 | 45.06 |
| AT5G16820.2 | Thale cress | nucleus | 44.33 | 44.7 |
| Solyc08g076590.2.1 | Tomato | nucleus | 44.95 | 44.49 |
| AT4G17750.1 | Thale cress | nucleus | 44.74 | 43.84 |
| PGSC0003DMT400038381 | Potato | nucleus | 44.95 | 43.78 |
| AT3G02990.1 | Thale cress | nucleus | 42.06 | 43.59 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 43.51 | 43.33 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 45.98 | 42.8 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 45.98 | 42.72 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 46.19 | 42.34 |
| AT3G51910.1 | Thale cress | nucleus | 23.71 | 42.28 |
| EER93074 | Sorghum | nucleus | 45.77 | 42.13 |
| Zm00001d034886_P001 | Maize | nucleus | 44.95 | 41.37 |
| AT5G43840.1 | Thale cress | nucleus | 23.09 | 39.72 |
| Zm00001d012823_P001 | Maize | nucleus | 44.33 | 38.67 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 45.57 | 38.5 |
| AT2G26150.1 | Thale cress | nucleus | 27.22 | 38.26 |
| AT3G63350.1 | Thale cress | nucleus | 21.03 | 36.17 |
| AT3G22830.1 | Thale cress | nucleus | 29.69 | 35.47 |
| AT5G45710.3 | Thale cress | nucleus | 22.47 | 31.59 |
| AT3G24520.1 | Thale cress | nucleus | 20.0 | 29.39 |
| AT5G03720.1 | Thale cress | nucleus | 24.33 | 28.64 |
| AT4G18880.1 | Thale cress | nucleus | 22.89 | 27.68 |
| AT5G54070.1 | Thale cress | nucleus | 18.76 | 27.49 |
| AT4G13980.1 | Thale cress | nucleus | 25.57 | 26.61 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | MapMan:26.4.2.1 | EntrezGene:840125 | ProteinID:AAF81328.1 | ProteinID:AAG60176.1 |
| ProteinID:AEE31464.1 | EMBL:AK118066 | ArrayExpress:AT1G32330 | EnsemblPlantsGene:AT1G32330 | RefSeq:AT1G32330 | TAIR:AT1G32330 |
| RefSeq:AT1G32330-TAIR-G | EnsemblPlants:AT1G32330.1 | TAIR:AT1G32330.1 | Symbol:ATHSFA1D | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009408 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| RefSeq:NP_001321152.1 | RefSeq:NP_174511.2 | PFAM:PF00447 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF162 | UniProt:Q9LQM7 |
| SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000034F434 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
Coordinates
chr1:-:11656964..11660471
Molecular Weight (calculated)
54527.5 Da
IEP (calculated)
4.638
GRAVY (calculated)
-0.872
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.