CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94810
EER95095
EER99712
EER99788
EES01731
EES16412
EES19649
KXG26133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	EES16412	AT1G55520.1	9801140
AT4G17750.1	EER94810	AT2G41140.1	18466301
AT4G17750.1	EER99788	AT2G41140.1	18466301
AT4G17750.1	EER95095	AT3G12580.1	11807141
AT4G17750.1	EES01731	AT3G12580.1	11807141
AT4G17750.1	EES19649	AT3G12580.1	11807141
AT4G17750.1	KXG26133	AT3G12580.1	11807141
AT4G17750.1	EES16412	AT3G13445.1	9801140
AT4G17750.1	EER99712	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034886_P001	Maize	nucleus	89.75	89.75
Os03t0854500-01	Rice	nucleus	78.94	82.21
Zm00001d012823_P001	Maize	nucleus	83.3	78.96
TraesCS4A01G322300.1	Wheat	nucleus	77.61	78.5
TraesCS5D01G553300.1	Wheat	nucleus	77.04	77.78
TraesCS5B01G556200.1	Wheat	nucleus	77.04	76.75
HORVU5Hr1G123770.1	Barley	nucleus	75.33	69.16
GSMUA_Achr4P04500_001	Banana	nucleus	49.91	59.91
GSMUA_Achr3P27600_001	Banana	nucleus	44.97	55.63
VIT_02s0012g01810.t01	Wine grape	nucleus	49.15	52.22
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	49.34	50.78
KRH74387	Soybean	nucleus	46.87	50.41
KRH07474	Soybean	nucleus	48.01	49.61
PGSC0003DMT400046000	Potato	nucleus	47.82	49.61
KRH39566	Soybean	nucleus	46.87	49.4
KRH77766	Soybean	nucleus	42.88	48.71
Solyc03g097120.2.1	Tomato	nucleus	45.16	48.47
CDX85486	Canola	nucleus	40.61	48.42
Bra023584.1-P	Field mustard	nucleus	40.04	47.74
CDY38085	Canola	nucleus	39.66	47.61
PGSC0003DMT400008199	Potato	nucleus	44.4	47.56
Solyc08g005170.2.1	Tomato	nucleus	47.25	47.25
KRH27709	Soybean	nucleus	41.37	46.98
Bra021381.1-P	Field mustard	nucleus	40.42	46.92
AT5G16820.2	Thale cress	nucleus	42.69	46.78
CDY58547	Canola	nucleus	40.23	46.7
PGSC0003DMT400038381	Potato	nucleus	43.83	46.39
Bra040179.1-P	Field mustard	nucleus	37.95	46.3
CDX78797	Canola	nucleus	37.76	46.28
Bra032023.1-P	Field mustard	nucleus	40.04	46.27
AT3G02990.1	Thale cress	nucleus	40.99	46.15
Solyc08g076590.2.1	Tomato	nucleus	42.88	46.12
CDY60785	Canola	nucleus	38.14	46.0
AT1G32330.1	Thale cress	nucleus	42.13	45.77
CDX92026	Canola	nucleus	38.71	45.54
Bra001071.1-P	Field mustard	nucleus	39.09	45.47
Bra023258.1-P	Field mustard	nucleus	41.94	45.38
CDX93842	Canola	nucleus	41.94	45.38
CDX74228	Canola	nucleus	39.09	45.27
CDY01288	Canola	nucleus	41.94	44.92
Solyc06g072750.2.1	Tomato	nucleus	40.99	44.81
PGSC0003DMT400069550	Potato	nucleus	40.8	44.7
CDY28731	Canola	nucleus	36.24	43.81
EER93298	Sorghum	nucleus	28.08	43.66
AT4G17750.1	Thale cress	nucleus	40.99	43.64
CDY16977	Canola	nucleus	35.86	42.86
Bra008593.1-P	Field mustard	nucleus	38.52	42.03
CDX69418	Canola	nucleus	38.52	41.68
EER94213	Sorghum	nucleus	28.46	41.44
EER95940	Sorghum	nucleus	29.03	41.13
Bra035507.1-P	Field mustard	nucleus	32.83	40.52
CDY44649	Canola	nucleus	34.54	38.32
KXG33312	Sorghum	nucleus	18.79	38.08
KXG29862	Sorghum	nucleus	18.6	36.7
EER90889	Sorghum	nucleus	25.81	36.66
EER89919	Sorghum	nucleus	18.6	35.13
EER95463	Sorghum	nucleus	26.0	35.04
EES01479	Sorghum	nucleus	27.51	33.41
EER95242	Sorghum	nucleus	25.81	32.77
CDX84097	Canola	nucleus	15.75	30.86
EES00942	Sorghum	plastid	22.58	30.2
EES01103	Sorghum	nucleus	20.68	29.86
EES06898	Sorghum	nucleus	26.95	28.63
EES18551	Sorghum	nucleus	24.86	27.52
EES05094	Sorghum	nucleus	25.24	27.42
KXG20211	Sorghum	nucleus	20.49	25.9

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	EntrezGene:8060849	UniProt:C5WRZ8	ncoils:Coil
EnsemblPlants:EER93074	ProteinID:EER93074	ProteinID:EER93074.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	ProteinID:OQU90600.1	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	EnsemblPlantsGene:SORBI_3001G007200
SUPFAM:SSF46785	unigene:Sbi.9715	UniParc:UPI0001A827C3	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002466076.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:717984..723547

Molecular Weight (calculated)

56992.9 Da

IEP (calculated)

4.761

GRAVY (calculated)

-0.451

Length

527 amino acids

Sequence
(BLAST)

001: MQGGVVAHAA AAAAAASTVT TAVAPPVPAH AAVVGNGGGP AAAAPPPPFL MKTYEMVDDP ATDDVVSWGP GNNSFIVWNT PEFARDLLPK YFKHSNFSSF
101: VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH LLKTINRRKP SLQGNSQPQQ PQLQNAPVPS CVEVGKFGLE EEIERLKRDK NVLMQELVRL RQQQQTTDHQ
201: LQTLGKRLQG MESRQQQMMS FLAKAMQSPG FLAQFVQQNE NSRRRIVAAN KKRRLPKQDG GLDSESAAAS LDGQIIKYQP LINEAAKAML RKILKLDSSH
301: RFESMGNSDN NNFLLENYMP AAQAFESSSS TRNSGVTLAE VPANSGLPYV SASSGLSAIC SPSVAPEIQC PVVLDNKLSN QVPNMSAVPP VSNPITAGSS
401: DISIPEFSDL ADLVNEDSVN IPGGAFEMPG PEFPLPEGDD SVPIETDETM YNNDETQSLP GIIDSFWEQF LVGSPLSADN DEVDSGGLDA RGSPQENGWS
501: KVGNISNLTE QMGLLSSTNH RDSGNGL

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.