Factsheet for PGSC0003DMT400008199

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097120.2.1	Tomato	nucleus	93.29	93.48
PGSC0003DMT400069550	Potato	nucleus	56.1	57.38
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	56.91	54.69
GSMUA_Achr4P04500_001	Banana	nucleus	46.34	51.94
KRH27709	Soybean	nucleus	48.17	51.08
KRH77766	Soybean	nucleus	47.76	50.65
CDX85486	Canola	nucleus	44.11	49.09
Bra023584.1-P	Field mustard	nucleus	44.11	49.09
CDY38085	Canola	nucleus	43.5	48.75
AT5G16820.2	Thale cress	nucleus	46.95	48.02
AT3G02990.1	Thale cress	nucleus	45.33	47.65
Bra021381.1-P	Field mustard	nucleus	43.9	47.58
CDY58547	Canola	nucleus	43.9	47.58
GSMUA_Achr3P27600_001	Banana	nucleus	40.85	47.18
Bra032023.1-P	Field mustard	nucleus	43.7	47.15
Bra001071.1-P	Field mustard	nucleus	43.29	47.02
CDX92026	Canola	nucleus	42.68	46.88
Os03t0854500-01	Rice	nucleus	47.97	46.64
CDX74228	Canola	nucleus	43.09	46.59
GSMUA_Achr4P17040_001	Banana	nucleus	45.73	46.2
TraesCS5D01G553300.1	Wheat	nucleus	48.37	45.59
TraesCS4A01G322300.1	Wheat	nucleus	48.17	45.49
PGSC0003DMT400046000	Potato	nucleus	46.54	45.08
TraesCS5B01G556200.1	Wheat	nucleus	48.37	44.99
Zm00001d034886_P001	Maize	nucleus	47.56	44.4
EER93074	Sorghum	nucleus	47.56	44.4
CDY28731	Canola	nucleus	39.23	44.27
CDY16977	Canola	nucleus	39.02	43.54
Bra008593.1-P	Field mustard	nucleus	42.68	43.48
CDX69418	Canola	nucleus	42.89	43.33
PGSC0003DMT400038381	Potato	nucleus	42.89	42.37
HORVU5Hr1G123770.1	Barley	nucleus	47.76	40.94
Zm00001d012823_P001	Maize	nucleus	45.33	40.11
PGSC0003DMT400041944	Potato	nucleus	26.63	38.08
PGSC0003DMT400021234	Potato	nucleus	26.63	37.11
PGSC0003DMT400016511	Potato	nucleus	26.63	36.19
PGSC0003DMT400049793	Potato	nucleus	26.22	35.44
PGSC0003DMT400049795	Potato	nucleus	25.81	35.28
PGSC0003DMT400082752	Potato	nucleus	23.17	31.58
PGSC0003DMT400044683	Potato	nucleus	25.81	30.83
PGSC0003DMT400071487	Potato	nucleus	25.2	30.77
PGSC0003DMT400011871	Potato	nucleus	28.05	28.87
PGSC0003DMT400001025	Potato	nucleus	20.33	27.17
PGSC0003DMT400006917	Potato	nucleus	24.59	24.35

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102584069	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
UniProt:M0ZU87	PFAM:PF00447	EnsemblPlantsGene:PGSC0003DMG400003160	PGSC:PGSC0003DMG400003160	EnsemblPlants:PGSC0003DMT400008199	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002957522
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006347585.1	SEG:seg	:	:

Description

Heat stress transcription factor A-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003160]

Coordinates

chr3:+:46675450..46680910

Molecular Weight (calculated)

54321.8 Da

IEP (calculated)

4.621

GRAVY (calculated)

-0.440

Length

492 amino acids

Sequence
(BLAST)

001: MDGVHEAPVA GNSSSPPFLN KTYDMVDDPS TDSVVSWSKS NNSFVVLNVP EFARDILPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGYKHL
101: LKSISRRKPP QVQGHQQTTS KVPNASVASC VEVGKFGIEE EVERLKRDKD VLMQELVKLR QQQQETDHQL VTVGQRVQLM ENRQQQMMSF LAKAMQSPGF
201: VAQLVHQQNG NNRHITGLNK KRRLPEQSEE NVACNPVNAL QDGQVVRYQP SMTEAAKVLQ QQILKINASG RLDNRLNTND CLTNNPLPPQ NSLDSSGASS
301: CISSVTLSEV MSTSSQPNLM SDSGFPFNSC SSIISETQSS TTVVPGEANI PVLPEADALN SQAVHDLPEF SHILGVTDLD LNMSETGNVP DIDTAQGILD
401: GLTTIVSDEF SANTDGDVLL DDMPKLPAIN DIFWDQILSA TPASPLTGDT DEIGSLVVEE DFLGVQESDW DKLKHMHHLT EQMGLLSSVA QI

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.