Factsheet for PGSC0003DMT400071487

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006000.2.1	Tomato	nucleus	96.77	97.26
VIT_10s0003g01770.t01	Wine grape	nucleus	49.38	57.35
KRH21206	Soybean	nucleus	51.86	53.32
KRH42919	Soybean	nucleus	52.61	52.74
KRH11063	Soybean	nucleus	50.87	52.3
CDY13041	Canola	nucleus	39.21	51.47
KRH59030	Soybean	nucleus	51.12	51.24
AT5G45710.3	Thale cress	nucleus	42.93	50.14
Bra017595.1-P	Field mustard	nucleus	42.18	50.0
CDY09259	Canola	nucleus	44.17	49.17
CDY23108	Canola	nucleus	41.44	49.12
CDX99415	Canola	nucleus	46.4	48.7
CDX76506	Canola	nucleus	44.17	48.63
Bra020988.1-P	Field mustard	nucleus	41.69	48.14
AT4G18880.1	Thale cress	nucleus	47.89	48.13
CDY69818	Canola	nucleus	45.91	47.44
Bra012571.1-P	Field mustard	nucleus	45.66	47.18
CDY01562	Canola	nucleus	45.91	47.07
GSMUA_Achr8P27750_001	Banana	nucleus	24.81	45.25
PGSC0003DMT400044683	Potato	nucleus	41.19	40.29
EES01479	Sorghum	nucleus	42.18	39.17
Zm00001d012749_P001	Maize	nucleus	41.94	39.03
Os01t0749300-02	Rice	nucleus	41.44	37.95
TraesCS3A01G289200.1	Wheat	nucleus	40.45	37.73
GSMUA_Achr3P15640_001	Banana	nucleus	42.18	37.53
HORVU3Hr1G071550.3	Barley	nucleus	40.2	37.5
TraesCS3B01G323800.1	Wheat	nucleus	40.45	36.96
GSMUA_Achr6P31750_001	Banana	nucleus	44.42	36.83
TraesCS3D01G289000.1	Wheat	nucleus	36.48	35.34
Bra013358.1-P	Field mustard	nucleus	43.67	34.04
CDX78902	Canola	nucleus	43.67	34.04
Zm00001d010812_P001	Maize	nucleus	37.72	33.85
Os05t0530400-01	Rice	nucleus	38.21	33.55
TraesCS1A01G350400.2	Wheat	nucleus	36.48	33.18
HORVU1Hr1G081300.1	Barley	nucleus	35.48	33.18
EES18551	Sorghum	nucleus	37.22	31.51
Zm00001d038746_P001	Maize	nucleus	35.24	30.28
PGSC0003DMT400041944	Potato	nucleus	25.81	30.23
PGSC0003DMT400016511	Potato	nucleus	26.05	29.01
PGSC0003DMT400011871	Potato	nucleus	33.25	28.03
PGSC0003DMT400021234	Potato	nucleus	24.32	27.76
PGSC0003DMT400049793	Potato	nucleus	24.81	27.47
PGSC0003DMT400082752	Potato	nucleus	24.32	27.15
PGSC0003DMT400049795	Potato	nucleus	24.07	26.94
PGSC0003DMT400069550	Potato	nucleus	30.27	25.36
PGSC0003DMT400008199	Potato	nucleus	30.77	25.2
PGSC0003DMT400046000	Potato	nucleus	31.27	24.8
PGSC0003DMT400038381	Potato	nucleus	30.27	24.5
PGSC0003DMT400001025	Potato	nucleus	21.84	23.91
PGSC0003DMT400006917	Potato	nucleus	23.57	19.11

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102582897	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M1CNW0
PFAM:PF00447	EnsemblPlantsGene:PGSC0003DMG401027812	PGSC:PGSC0003DMG401027812	EnsemblPlants:PGSC0003DMT400071487	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000296F9AD	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_015168157.1	RefSeq:XP_015168158.1	:	:	:

Description

Heat shock factor [Source:PGSC_GENE;Acc:PGSC0003DMG401027812]

Coordinates

chr3:+:979178..984815

Molecular Weight (calculated)

46216.1 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.770

Length

403 amino acids

Sequence
(BLAST)

001: MDEAPCSVNA LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVLNPPDFAR DLLPRYFKHN NFSSFIRQLN TYGFKKIDPE QWEFANEDFL RGQPHLLKNI
101: YRRKPVHSHS VQNIHILSSS ALTESERQGY KEDIEKLKHE NESLHLVLHR HKQDHQGLEM QMQVLNQRVQ QVKDRQKNVL STLARTINKP GLALSLMPQL
201: EMNERKRRLP GNSFLYNETG LEDNQASSSE NSTRENMDPT SLLTLNKEVL DQLEPSLTFW EYTLRDIDQA RMRQSSSIDL DESISCADSP AISYPQLTVD
301: VGSKVSDIDM NSEPNGNTTP DVTPPENRVE TASNNVPTGV NDVFWEQFLT ENPGSTDVKP EREDMESKIS ESKTVEDGKF WWNRKTVISL TEQLGHLTPA
401: ERM

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.