CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11063	Soybean	nucleus	93.88	93.88
KRH59030	Soybean	nucleus	71.17	69.4
KRH42919	Soybean	nucleus	68.88	67.16
CDY13041	Canola	nucleus	45.66	58.31
AT5G45710.3	Thale cress	nucleus	50.77	57.68
Bra017595.1-P	Field mustard	nucleus	48.98	56.47
CDY23108	Canola	nucleus	48.47	55.88
CDY09259	Canola	nucleus	51.02	55.25
VIT_10s0003g01770.t01	Wine grape	nucleus	48.72	55.04
Bra012571.1-P	Field mustard	nucleus	54.59	54.87
CDX76506	Canola	nucleus	51.02	54.64
CDY01562	Canola	nucleus	54.59	54.45
CDX99415	Canola	nucleus	53.32	54.43
CDY69818	Canola	nucleus	54.08	54.36
Bra020988.1-P	Field mustard	nucleus	47.7	53.58
Solyc03g006000.2.1	Tomato	nucleus	53.57	52.37
AT4G18880.1	Thale cress	nucleus	53.32	52.12
PGSC0003DMT400071487	Potato	nucleus	53.32	51.86
Solyc02g072000.2.1	Tomato	nucleus	52.3	50.25
GSMUA_Achr8P27750_001	Banana	nucleus	28.32	50.23
EES01479	Sorghum	nucleus	45.41	41.01
Zm00001d012749_P001	Maize	nucleus	44.13	39.95
GSMUA_Achr3P15640_001	Banana	nucleus	45.92	39.74
Os01t0749300-02	Rice	nucleus	44.39	39.55
CDX78902	Canola	nucleus	51.53	39.07
Bra013358.1-P	Field mustard	nucleus	51.53	39.07
TraesCS3A01G289200.1	Wheat	nucleus	42.35	38.43
GSMUA_Achr6P31750_001	Banana	nucleus	47.45	38.27
HORVU3Hr1G071550.3	Barley	nucleus	42.09	38.19
TraesCS3B01G323800.1	Wheat	nucleus	41.84	37.19
HORVU1Hr1G081300.1	Barley	nucleus	40.05	36.43
TraesCS3D01G289000.1	Wheat	nucleus	38.27	36.06
Zm00001d010812_P001	Maize	nucleus	41.07	35.86
Os05t0530400-01	Rice	nucleus	41.33	35.29
TraesCS1A01G350400.2	Wheat	nucleus	39.03	34.54
EES18551	Sorghum	nucleus	40.56	33.4
Zm00001d038746_P001	Maize	nucleus	39.03	32.62
KRH32059	Soybean	nucleus	27.55	31.67
KRH42748	Soybean	nucleus	37.76	31.03
KRH58845	Soybean	nucleus	37.76	30.9
KRG95588	Soybean	nucleus	28.83	30.54
KRH05436	Soybean	nucleus	27.04	29.86
KRH67266	Soybean	nucleus	29.34	29.79
KRH39283	Soybean	nucleus	24.23	29.69
KRH31657	Soybean	nucleus	25.51	29.67
KRG91367	Soybean	nucleus	27.55	29.51
KRH15573	Soybean	nucleus	26.79	28.85
KRH35452	Soybean	nucleus	26.53	28.42
KRH61515	Soybean	nucleus	26.28	27.69
KRH02689	Soybean	nucleus	25.51	24.75
KRH19208	Soybean	nucleus	25.51	24.51
KRH39566	Soybean	nucleus	30.87	24.2
KRH74387	Soybean	nucleus	30.1	24.08
KRH77766	Soybean	nucleus	27.81	23.49
KRH27709	Soybean	nucleus	27.81	23.49
KRH20029	Soybean	nucleus	27.04	23.35
KRH07474	Soybean	nucleus	30.36	23.33
KRH67848	Soybean	nucleus	25.0	23.17
KRH32651	Soybean	nucleus	26.79	22.83

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100820566	MapMan:15.5.13	EMBL:ACUP02008347	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G225700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
UniProt:I1M1P7	InterPro:IPR036388	EnsemblPlants:KRH21206	ProteinID:KRH21206	ProteinID:KRH21206.1	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI0001ED059F	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:33823702..33825775

Molecular Weight (calculated)

44936.1 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.757

Length

392 amino acids

Sequence
(BLAST)

001: MMEEAQGSSS SLPPFLTKIY EMVDDPSTNS IVSWSATNRS FIVWNPPEFS RDLLPKYFKH NNFSSFIRQL NTYGFRKIDP EQWEFANDDF VRGQPHLLKN
101: IHRRKPVHSH SLQNIQGQGV SSLTESERQS FKDEIEKLKH EKEQLLRELE MHEQEWKMYE VQLQHSNDRL EKLEKKQENL VSSVSQVLQK PGIALNLLLL
201: TENMDRKRRL PRSGLFSDDA SIEDHMETSQ VLPRENADGA SIFSSSTERL DLLESSMTFW ENITHDVGDV FVQSHLNLDF DESTSCADSP AISCVQLEVE
301: DQPKSHGINV SSEPAVVAAP DLDASKEQPV ETAPLTTGVN DIFWERFLTE NPGSSEMQEA QSEREDSDGR SNAKFWWNIR NVNNPPEQMG HS

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.