CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05436
KRH08858
KRH15573
KRH38373
KRH61515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26150.1	KRH05436	AT2G26150.1	21510947
AT2G26150.1	KRH15573	AT2G26150.1	21510947
AT2G26150.1	KRH61515	AT2G26150.1	21510947
AT2G26150.1	KRH08858	AT5G52640.1	19366428
AT2G26150.1	KRH38373	AT5G52640.1	19366428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05436	Soybean	nucleus	62.37	65.35
KRH15573	Soybean	nucleus	63.71	65.11
VIT_04s0008g01110.t01	Wine grape	nucleus	58.87	56.44
CDY21503	Canola	nucleus	51.88	55.3
AT2G26150.1	Thale cress	nucleus	51.08	55.07
Bra000557.1-P	Field mustard	nucleus	51.34	54.89
PGSC0003DMT400021234	Potato	nucleus	49.73	52.41
GSMUA_Achr2P16660_001	Banana	nucleus	38.17	52.01
GSMUA_Achr6P00960_001	Banana	nucleus	43.55	51.76
CDX83217	Canola	nucleus	51.61	51.47
KRH31657	Soybean	nucleus	40.86	45.1
KRH32059	Soybean	nucleus	39.52	43.11
KRG91367	Soybean	nucleus	41.94	42.62
KRG95588	Soybean	nucleus	42.2	42.43
KRH35452	Soybean	nucleus	40.05	40.71
KRH67266	Soybean	nucleus	41.4	39.9
Os06t0565200-00	Rice	nucleus	34.68	38.97
TraesCS7B01G267300.1	Wheat	nucleus	34.95	36.83
Zm00001d046204_P001	Maize	nucleus	34.68	35.34
TraesCS7A01G360400.1	Wheat	nucleus	33.87	35.2
HORVU7Hr1G087690.1	Barley	nucleus	33.87	34.52
KRH02689	Soybean	nucleus	34.41	31.68
KXG20211	Sorghum	nucleus	34.68	30.94
KRH19208	Soybean	nucleus	33.6	30.64
KRH77766	Soybean	nucleus	36.02	28.88
Os01t0571300-01	Rice	mitochondrion, nucleus	31.18	28.86
KRH74387	Soybean	nucleus	37.9	28.78
KRH39283	Soybean	nucleus	24.73	28.75
KRH27709	Soybean	nucleus	35.75	28.66
EES00942	Sorghum	plastid	29.84	28.17
KRH39566	Soybean	nucleus	37.63	28.0
KRH07474	Soybean	nucleus	37.37	27.25
KRH11063	Soybean	nucleus	27.96	26.53
KRH21206	Soybean	nucleus	27.69	26.28
Zm00001d044259_P001	Maize	plastid	26.61	26.26
KRH20029	Soybean	nucleus	31.45	25.77
KRH59030	Soybean	nucleus	27.42	25.37
KRH42919	Soybean	nucleus	26.88	24.88
KRH67848	Soybean	nucleus	28.23	24.82
KRH32651	Soybean	nucleus	30.65	24.78
KRH58845	Soybean	nucleus	29.84	23.17
KRH42748	Soybean	nucleus	29.03	22.64

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100794605	MapMan:15.5.13	EMBL:ACUP02002171	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G052000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
UniProt:I1JTX5	InterPro:IPR036388	EMBL:JN896306	ProteinID:KRH61514.1	EnsemblPlants:KRH61515	ProteinID:KRH61515
ProteinID:KRH61515.1	ProteinID:KRH61516.1	ProteinID:KRH61517.1	ProteinID:KRH61518.1	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF186	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0001E24115
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:4216619..4218904

Molecular Weight (calculated)

41925.1 Da

IEP (calculated)

4.847

GRAVY (calculated)

-0.577

Length

372 amino acids

Sequence
(BLAST)

001: MKGVTVKVEE TMAYANAAST SPTTSSNLSP QPMEGLHEVG PPPFLTKTFD VVEDPSTNDI VSWSRSRNSF VVWDSHKFST TILPRYFKHN NFSSFVRQLN
101: TYGFRKIDPD KWEFANEGFL AGQRQLLKTI KRRRHVTVTQ TQSHEGGSGA CVELGEFGLE GEMERLRRDR TVLMAEIVRL RQQQHNSREQ LLSMETRLQA
201: TEKKHQQMMN FLAKALNNQA FIQQFLQRNA QNKELQGARR KRRLTATPSV ENLQQDHFAL SIEEGSATIE SQMESFFSAA CNDPLESNSE LKDPILSSVP
301: VASGSNLGEV SDSVWEDLLN QDLVAGDPEE EVVIGDFSQV DVPVEDLIAD ADEWSEDLQN LVDHMGYLGS KP

Best Arabidopsis Sequence Match ( AT2G26150.1 )
(BLAST)

001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP

Arabidopsis Description

HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.