Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26150.1 | CDX83217 | AT2G26150.1 | 21510947 |
| AT2G26150.1 | CDY21503 | AT2G26150.1 | 21510947 |
| AT2G26150.1 | CDY27839 | AT5G52640.1 | 19366428 |
| AT2G26150.1 | CDY50297 | AT5G52640.1 | 19366428 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83217 | Canola | nucleus | 95.42 | 89.28 |
| AT2G26150.1 | Thale cress | nucleus | 87.97 | 88.99 |
| KRH05436 | Soybean | nucleus | 55.01 | 54.08 |
| KRH15573 | Soybean | nucleus | 56.16 | 53.85 |
| VIT_04s0008g01110.t01 | Wine grape | nucleus | 58.17 | 52.32 |
| KRH61515 | Soybean | nucleus | 55.3 | 51.88 |
| GSMUA_Achr2P16660_001 | Banana | nucleus | 40.11 | 51.28 |
| PGSC0003DMT400021234 | Potato | nucleus | 50.43 | 49.86 |
| GSMUA_Achr6P00960_001 | Banana | nucleus | 42.41 | 47.28 |
| CDX95313 | Canola | nucleus | 34.1 | 44.4 |
| CDY29054 | Canola | nucleus | 32.95 | 43.4 |
| CDX90626 | Canola | nucleus | 33.24 | 43.12 |
| CDX90627 | Canola | nucleus | 34.67 | 42.16 |
| CDY14893 | Canola | nucleus | 30.66 | 40.84 |
| CDX94887 | Canola | nucleus | 31.23 | 40.37 |
| CDY43158 | Canola | nucleus | 34.67 | 39.54 |
| CDY11470 | Canola | nucleus | 31.81 | 38.95 |
| Os06t0565200-00 | Rice | nucleus | 36.68 | 38.67 |
| CDX76693 | Canola | nucleus | 31.52 | 38.6 |
| CDY10674 | Canola | nucleus | 41.26 | 37.02 |
| CDX94884 | Canola | nucleus | 30.09 | 36.59 |
| CDY10311 | Canola | nucleus | 40.11 | 36.08 |
| TraesCS7B01G267300.1 | Wheat | nucleus | 36.39 | 35.98 |
| CDY34229 | Canola | nucleus | 38.68 | 35.62 |
| CDY46606 | Canola | nucleus | 38.4 | 34.99 |
| Zm00001d046204_P001 | Maize | nucleus | 36.39 | 34.79 |
| CDY46607 | Canola | nucleus | 36.96 | 34.77 |
| TraesCS7A01G360400.1 | Wheat | nucleus | 35.53 | 34.64 |
| CDX92958 | Canola | nucleus | 33.52 | 34.01 |
| HORVU7Hr1G087690.1 | Barley | nucleus | 34.67 | 33.15 |
| Os01t0571300-01 | Rice | mitochondrion, nucleus | 36.39 | 31.59 |
| CDX78797 | Canola | nucleus | 38.68 | 31.4 |
| CDY50608 | Canola | nucleus | 28.08 | 31.11 |
| CDX93024 | Canola | nucleus | 27.22 | 31.05 |
| CDX77420 | Canola | nucleus | 27.79 | 30.89 |
| EES00942 | Sorghum | plastid | 34.67 | 30.71 |
| CDY60785 | Canola | nucleus | 38.4 | 30.66 |
| CDY39545 | Canola | nucleus | 27.51 | 30.57 |
| CDY13041 | Canola | nucleus | 26.07 | 29.64 |
| KXG20211 | Sorghum | nucleus | 35.24 | 29.5 |
| CDY38085 | Canola | nucleus | 36.96 | 29.39 |
| CDX85486 | Canola | nucleus | 36.96 | 29.19 |
| CDY58547 | Canola | nucleus | 37.82 | 29.07 |
| CDX92026 | Canola | nucleus | 36.68 | 28.57 |
| CDY23108 | Canola | nucleus | 27.22 | 27.94 |
| CDX74228 | Canola | nucleus | 36.39 | 27.91 |
| CDY01288 | Canola | nucleus | 39.26 | 27.85 |
| CDX93842 | Canola | nucleus | 38.68 | 27.72 |
| CDX70290 | Canola | nucleus | 28.65 | 27.55 |
| CDY16977 | Canola | nucleus | 34.67 | 27.44 |
| Zm00001d044259_P001 | Maize | plastid | 29.51 | 27.32 |
| CDY28731 | Canola | nucleus | 33.52 | 26.83 |
| CDX69418 | Canola | nucleus | 36.96 | 26.49 |
| CDY10361 | Canola | nucleus | 29.8 | 25.94 |
| CDY09259 | Canola | nucleus | 26.36 | 25.41 |
| CDX76506 | Canola | nucleus | 26.07 | 24.86 |
| CDX99415 | Canola | nucleus | 27.22 | 24.74 |
| CDY01562 | Canola | nucleus | 27.51 | 24.43 |
| CDY69818 | Canola | nucleus | 27.22 | 24.36 |
| CDY44649 | Canola | nucleus | 31.81 | 23.37 |
| CDY12723 | Canola | nucleus | 29.51 | 21.68 |
| CDY01180 | Canola | nucleus | 28.94 | 21.17 |
| CDX78902 | Canola | nucleus | 26.65 | 17.99 |
| CDY43157 | Canola | cytosol | 2.58 | 10.0 |
| CDX84097 | Canola | nucleus | 6.3 | 8.18 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078G9T9 | UniProt:A0A078G9T9 | EnsemblPlants:CDY21503 | ProteinID:CDY21503 |
| ProteinID:CDY21503.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00015936001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF186 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EDC1B4 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaC03g26940DBnaC03g26940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9T9]
Coordinates
chrLK032121:-:621411..623447
Molecular Weight (calculated)
39261.3 Da
IEP (calculated)
4.730
GRAVY (calculated)
-0.546
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLKVELEE ETVTYGGSAA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY DMVEDPATDT VVSWSSGRNS FIVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKS IKRRRNMGLQ TVVNQQGSGS GMSCVEVGQY GFEGEVERLK RDHSLLVAEV VRLRQQQHNS KSQVAEMEQR
201: LLVTEKRQQQ MMTFLAKALN NPNFVQQFAL MSKEKKGLFG SDVGRKRRLT SSPSLGTIEE RVLHDQEFDR MKDDMETLLA AAIDDEASNL VAASKDEQCL
301: EAMNVMMEDG SLEPEIDVKV EDLVASPLDW DSEDLHDIVD QMGFLGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKS IKRRRNMGLQ TVVNQQGSGS GMSCVEVGQY GFEGEVERLK RDHSLLVAEV VRLRQQQHNS KSQVAEMEQR
201: LLVTEKRQQQ MMTFLAKALN NPNFVQQFAL MSKEKKGLFG SDVGRKRRLT SSPSLGTIEE RVLHDQEFDR MKDDMETLLA AAIDDEASNL VAASKDEQCL
301: EAMNVMMEDG SLEPEIDVKV EDLVASPLDW DSEDLHDIVD QMGFLGSEP
001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
Arabidopsis Description
HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.