Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040179.1-P | Field mustard | nucleus | 99.3 | 98.84 |
| CDY60785 | Canola | nucleus | 98.37 | 96.8 |
| AT4G17750.1 | Thale cress | nucleus | 80.93 | 70.3 |
| CDY43158 | Canola | nucleus | 36.05 | 50.65 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 53.72 | 46.57 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 46.51 | 45.56 |
| KRH74387 | Soybean | nucleus | 51.86 | 45.51 |
| KRH07474 | Soybean | nucleus | 53.72 | 45.29 |
| KRH39566 | Soybean | nucleus | 52.09 | 44.8 |
| CDY14893 | Canola | nucleus | 26.28 | 43.13 |
| CDX93842 | Canola | nucleus | 48.14 | 42.51 |
| CDY01288 | Canola | nucleus | 48.37 | 42.28 |
| CDX95313 | Canola | nucleus | 26.05 | 41.79 |
| PGSC0003DMT400046000 | Potato | nucleus | 49.07 | 41.54 |
| CDY58547 | Canola | nucleus | 43.49 | 41.19 |
| CDX85486 | Canola | nucleus | 42.33 | 41.18 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 40.7 | 41.08 |
| Solyc08g005170.2.1 | Tomato | nucleus | 50.23 | 40.99 |
| CDX90626 | Canola | nucleus | 25.58 | 40.89 |
| CDY29054 | Canola | nucleus | 25.12 | 40.75 |
| CDX94887 | Canola | nucleus | 25.35 | 40.37 |
| Solyc08g076590.2.1 | Tomato | nucleus | 45.81 | 40.2 |
| CDY38085 | Canola | nucleus | 40.93 | 40.09 |
| PGSC0003DMT400038381 | Potato | nucleus | 46.28 | 39.96 |
| CDX92026 | Canola | nucleus | 41.4 | 39.73 |
| Os03t0854500-01 | Rice | nucleus | 46.51 | 39.53 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 44.65 | 39.43 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 47.67 | 39.35 |
| CDX74228 | Canola | nucleus | 41.63 | 39.34 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 47.67 | 39.27 |
| CDY28731 | Canola | nucleus | 39.53 | 38.99 |
| CDY21503 | Canola | nucleus | 31.4 | 38.68 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 47.44 | 38.56 |
| CDY16977 | Canola | nucleus | 39.07 | 38.1 |
| CDY34229 | Canola | nucleus | 33.49 | 37.99 |
| CDY10674 | Canola | nucleus | 34.19 | 37.79 |
| EER93074 | Sorghum | nucleus | 46.28 | 37.76 |
| CDX69418 | Canola | nucleus | 42.33 | 37.37 |
| CDX90627 | Canola | nucleus | 24.88 | 37.28 |
| Zm00001d034886_P001 | Maize | nucleus | 45.58 | 37.19 |
| CDY46607 | Canola | nucleus | 31.86 | 36.93 |
| CDY10311 | Canola | nucleus | 33.26 | 36.86 |
| CDY46606 | Canola | nucleus | 32.79 | 36.81 |
| CDY44649 | Canola | nucleus | 40.47 | 36.63 |
| CDX76693 | Canola | nucleus | 23.72 | 35.79 |
| CDY11470 | Canola | nucleus | 23.72 | 35.79 |
| CDX83217 | Canola | nucleus | 30.93 | 35.66 |
| CDX94884 | Canola | nucleus | 23.72 | 35.54 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 47.44 | 35.54 |
| CDY13041 | Canola | nucleus | 25.35 | 35.5 |
| Zm00001d012823_P001 | Maize | nucleus | 45.58 | 35.25 |
| CDX92958 | Canola | nucleus | 27.91 | 34.88 |
| CDY23108 | Canola | nucleus | 26.28 | 33.24 |
| CDY09259 | Canola | nucleus | 27.44 | 32.6 |
| CDX93024 | Canola | nucleus | 22.79 | 32.03 |
| CDX77420 | Canola | nucleus | 23.26 | 31.85 |
| CDY50608 | Canola | nucleus | 23.26 | 31.75 |
| CDX99415 | Canola | nucleus | 28.14 | 31.51 |
| CDX76506 | Canola | nucleus | 26.74 | 31.42 |
| CDY39545 | Canola | nucleus | 22.79 | 31.21 |
| CDX70290 | Canola | nucleus | 26.05 | 30.85 |
| CDY01562 | Canola | nucleus | 27.44 | 30.03 |
| CDY69818 | Canola | nucleus | 27.21 | 30.0 |
| CDY10361 | Canola | nucleus | 26.74 | 28.68 |
| CDY12723 | Canola | nucleus | 27.44 | 24.84 |
| CDX84097 | Canola | nucleus | 15.35 | 24.54 |
| CDY01180 | Canola | nucleus | 26.74 | 24.11 |
| CDX78902 | Canola | nucleus | 25.81 | 21.47 |
| CDY43157 | Canola | cytosol | 4.42 | 21.11 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | MapMan:26.4.2.1 | GO:A0A078CPZ0 | EnsemblPlants:CDX78797 | ProteinID:CDX78797 |
| ProteinID:CDX78797.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00131260001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF162 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EF3D14 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaA01g08640D
Coordinates
chrLK031816:-:99961..101360
Molecular Weight (calculated)
47857.1 Da
IEP (calculated)
4.839
GRAVY (calculated)
-0.623
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDGVTGGDS KSGEATTAPP LRNPHPATLL GANALPPPFL SKTYDMVEDP ASDAIVSWSP ANNSFVVWDP PEFSRSLLPR YFKHNNFSSF VRQLNTYGFR
101: KVDPDRWEFA NEGFLRGQKH LLKTISRRKS THGHGTSSSN TQSHQGHMAS LSSCVEVGKF GLEEEVEQLK RDKNVLMQEL VKLRQQQQST DSKLQTMVKS
201: LQTMEQRQQQ IMSFLAKAVQ NPTFLSQFIQ KQTDSNNMHV TEASKKRRLT EDGTTAASDG QIVKYQPIRS DSMMWNMMNT DEKFPFSPNR DSGVTFQEVL
301: LPTTSGQSQA YAPIPSASTS LMPMIPPMPQ ESISDSPTEN YMNAEKDVSE AFISPSPFLD GGSVPNQLEG LPQDLDIDEL MSNCDIFEEY LAQSPVFGDE
401: TTLESSDANG GHVDKLIEEL GHLTSETKQL
101: KVDPDRWEFA NEGFLRGQKH LLKTISRRKS THGHGTSSSN TQSHQGHMAS LSSCVEVGKF GLEEEVEQLK RDKNVLMQEL VKLRQQQQST DSKLQTMVKS
201: LQTMEQRQQQ IMSFLAKAVQ NPTFLSQFIQ KQTDSNNMHV TEASKKRRLT EDGTTAASDG QIVKYQPIRS DSMMWNMMNT DEKFPFSPNR DSGVTFQEVL
301: LPTTSGQSQA YAPIPSASTS LMPMIPPMPQ ESISDSPTEN YMNAEKDVSE AFISPSPFLD GGSVPNQLEG LPQDLDIDEL MSNCDIFEEY LAQSPVFGDE
401: TTLESSDANG GHVDKLIEEL GHLTSETKQL
001: MFVNFKYFSF FIRTKMDGVT GGGTNIGEAV TAPPPRNPHP ATLLNANSLP PPFLSKTYDM VEDPATDAIV SWSPTNNSFI VWDPPEFSRD LLPKYFKHNN
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH
Arabidopsis Description
HSFA1AHeat stress transcription factor A-1a [Source:UniProtKB/Swiss-Prot;Acc:P41151]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.