CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX78797
CDX92401
CDX95314
CDY23174
CDY60785

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19100.1	CDX73678	AT3G51920.1	17360592
AT3G19100.1	CDX95314	AT3G51920.1	17360592
AT3G19100.1	CDY23174	AT3G51920.1	17360592
AT3G19100.1	CDX78797	AT4G17750.1	18466301
AT3G19100.1	CDY60785	AT4G17750.1	18466301
AT3G19100.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18568	Canola	cytosol, plastid	98.31	97.98
AT3G19100.1	Thale cress	cytosol	94.09	92.99
CDX92303	Canola	cytosol	93.41	92.79
CDX99267	Canola	cytosol	93.07	92.45
CDY22990	Canola	cytosol	89.86	89.56
CDX82311	Canola	cytosol	89.02	89.02
CDX77233	Canola	cytosol, plastid	80.91	81.05
CDY16510	Canola	cytosol, plastid	81.08	80.54
Os07t0619800-02	Rice	cytosol, plasma membrane	58.78	76.82
TraesCS2D01G173100.1	Wheat	cytosol	59.8	74.37
VIT_03s0063g00940.t01	Wine grape	cytosol	71.11	72.09
KRH71170	Soybean	cytosol	71.62	70.9
KRH50248	Soybean	cytosol	71.45	70.74
CDY69753	Canola	cytosol, plastid	63.68	70.6
Solyc01g108400.2.1	Tomato	cytosol	69.76	70.24
PGSC0003DMT400066365	Potato	cytosol	69.26	69.73
GSMUA_Achr1P21380_001	Banana	cytosol	71.28	69.52
CDY65651	Canola	cytosol	67.91	68.72
CDY52824	Canola	cytosol	68.75	68.52
CDY65016	Canola	cytosol	68.58	68.35
GSMUA_Achr2P07660_001	Banana	cytosol	69.43	67.71
Zm00001d000221_P001	Maize	cytosol	12.84	66.67
EER99712	Sorghum	cytosol	66.72	65.72
Zm00001d006885_P002	Maize	cytosol	63.68	65.68
CDY22505	Canola	cytosol	62.84	65.49
CDY35427	Canola	cytosol	62.5	65.26
CDX79956	Canola	cytosol	63.18	64.82
TraesCS2A01G165800.1	Wheat	cytosol, plastid	65.88	64.68
TraesCS2B01G191800.1	Wheat	cytosol	65.88	64.57
CDY23873	Canola	cytosol	62.84	64.36
CDY47375	Canola	cytosol, nucleus, plasma membrane	61.99	63.94
CDX76010	Canola	cytosol	60.98	63.33
Zm00001d022166_P001	Maize	cytosol	58.11	60.03
CDY57585	Canola	cytosol, mitochondrion	41.55	59.42
CDY48019	Canola	cytosol	58.45	58.05
CDY27530	Canola	cytosol	58.45	58.05
CDY06943	Canola	cytosol	44.59	56.65
CDY19836	Canola	cytosol	54.39	55.52
CDX87128	Canola	cytosol	54.22	55.34
CDX88104	Canola	cytosol	54.05	54.89
CDY08129	Canola	cytosol	54.56	54.29
CDX80445	Canola	cytosol	53.21	54.03
CDY05930	Canola	cytosol	54.39	53.85
CDX86978	Canola	cytosol	54.39	49.61
CDY00200	Canola	cytosol	54.39	49.31
HORVU2Hr1G030520.1	Barley	cytosol	40.71	48.69
CDX87112	Canola	cytosol	22.64	46.21
CDY45213	Canola	plastid	40.37	45.01
CDY30782	Canola	plastid	39.53	44.74
CDX81407	Canola	plastid	40.2	43.99
CDY18593	Canola	plastid	39.7	43.6
CDY47052	Canola	cytosol	39.53	43.25
CDY38141	Canola	cytosol, plastid	41.72	43.03
CDX72575	Canola	cytosol	39.19	42.88
CDY63401	Canola	cytosol, plastid	41.22	42.36
CDY07808	Canola	plastid	41.39	41.95
CDY29208	Canola	plastid	41.22	41.92
CDY48773	Canola	cytosol	30.07	37.55
CDY40640	Canola	cytosol	14.19	37.5
CDX92529	Canola	cytosol	33.11	36.7
CDY14001	Canola	cytosol	32.43	36.23
CDY42266	Canola	cytosol	32.6	36.14
CDY44918	Canola	cytosol	32.43	35.96
CDY14793	Canola	cytosol	29.56	35.86
CDY53966	Canola	cytosol	32.09	35.71
CDX97205	Canola	cytosol	32.26	35.7
CDY06900	Canola	cytosol	31.42	35.03
CDX79906	Canola	cytosol	31.42	34.96
CDX67695	Canola	cytosol	31.59	34.89
CDX73684	Canola	cytosol	31.08	34.85
CDY33817	Canola	cytosol	31.59	34.76
CDX95303	Canola	cytosol	30.74	34.47
CDY29049	Canola	cytosol	30.74	34.47
CDX78044	Canola	cytosol, nucleus, plasma membrane	30.74	34.47
CDY45391	Canola	cytosol	31.76	34.43
CDX73108	Canola	cytosol	31.76	34.37
CDY21691	Canola	cytosol, plastid	31.76	34.37
CDY23165	Canola	cytosol	30.57	34.28
CDY10809	Canola	cytosol	31.08	34.26
CDX72022	Canola	cytosol	31.25	34.26
CDX81903	Canola	cytosol, plastid	31.42	34.25
CDX90631	Canola	cytosol	30.57	34.22
CDY06098	Canola	cytosol	31.25	34.2
CDY34489	Canola	cytosol	30.91	34.01
CDY16652	Canola	cytosol	26.86	33.76
CDX84782	Canola	cytosol, plastid	31.08	33.45
CDY23939	Canola	cytosol, plastid	31.08	33.45
CDY19084	Canola	plastid	31.59	33.04
CDY15391	Canola	plastid	31.76	32.41
CDY71104	Canola	cytosol	7.43	31.43
CDY26714	Canola	cytosol	31.42	30.54
CDY19259	Canola	cytosol, plastid	31.42	30.34
CDY10803	Canola	cytosol	20.44	27.19
CDY24762	Canola	cytosol	8.45	22.12
CDX94570	Canola	cytosol	26.52	21.16

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	MapMan:18.4.5.5	Gene3D:3.30.200.20	GO:A0A078E4K6	EnsemblPlants:CDX95464
ProteinID:CDX95464	ProteinID:CDX95464.1	InterPro:EF-hand-dom_pair	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00101238001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24349	PANTHER:PTHR24349:SF115	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF47473
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EDFC3F	SEG:seg	:	:

Description

BnaC01g33560D

Coordinates

chrLK031889:-:411534..414900

Molecular Weight (calculated)

66515.8 Da

IEP (calculated)

9.362

GRAVY (calculated)

-0.365

Length

592 amino acids

Sequence
(BLAST)

001: MGGCTSKPSS TSVKPNPYAP KDSLPQNDDS TPARTSTAVK ASPFFPFYTP SPARHRRNKS HRDGGGESKS VTGTPLRQLA RAFHPPSPAK HIRDVLRRRK
101: EKKEGAPPAA RQREEEEREE VGLDKRFGFA KDFQSRMELG EEIGRGHFGY TCSAKFKKGE FKDHEVAVKV IPKSKMTTAI SIEDVRREVK ILRALSGHNN
201: LVQFYDAFED NANVYIVMEL CGGGELLDRI LARGGKYSED DAKAVLIQIL NVVAFCHLQG VVHRDLKPEN FLYTSKEENS QLKVIDFGLS DFVRPDERLN
301: DIVGSAYYVA PEVLHRSYTT EADVWSIGVI AYILLCGSRP FWARTESGIF RAVLKADPSF DEPPWPSLSL EAKDFVKRLL YKDPRKRMTA SQALMHPWIS
401: GSKKMNIPFD ILIFRQIKAY LKSSSLRKAA LMALSKTLIT DELLYLKAQF AILAPNKNGL ITLDNIRTAL ATNATEAMKE SRIPDFLALL NGLQYKGMDF
501: EEFCAASISV HQHESLDCWE QSVRHAYELF EMNGNRVIVI EELASELGVG SSIPVHTILH DWIRHSDGKL SFLGFVKLLH GVSTRQSLAK TR

Best Arabidopsis Sequence Match ( AT3G19100.1 )
(BLAST)

001: MGGCTSKPSS SVKPNPYAPK DAVLQNDDST PAHPGKSPVR SSPAVKASPF FPFYTPSPAR HRRNKSRDGG GGESKSVTST PLRQLARAFH PPSPARHIRD
101: VLRRRKEKKE AALPAARQQK EEEEREEVGL DKRFGFSKEL QSRIELGEEI GRGHFGYTCS AKFKKGELKD QEVAVKVIPK SKMTSAISIE DVRREVKILR
201: ALSGHQNLVQ FYDAFEDNAN VYIVMELCGG GELLDRILAR GGKYSEDDAK AVLIQILNVV AFCHLQGVVH RDLKPENFLY TSKEENSMLK VIDFGLSDFV
301: RPDERLNDIV GSAYYVAPEV LHRSYTTEAD VWSIGVIAYI LLCGSRPFWA RTESGIFRAV LKADPSFDEP PWPSLSFEAK DFVKRLLYKD PRKRMTASQA
401: LMHPWIAGYK KIDIPFDILI FKQIKAYLRS SSLRKAALMA LSKTLTTDEL LYLKAQFAHL APNKNGLITL DSIRLALATN ATEAMKESRI PDFLALLNGL
501: QYKGMDFEEF CAASISVHQH ESLDCWEQSI RHAYELFEMN GNRVIVIEEL ASELGVGSSI PVHTILNDWI RHTDGKLSFL GFVKLLHGVS TRQSLAKTR

Arabidopsis Description

CRK2CDPK-related kinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.