Factsheet for PGSC0003DMT400066365

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400038381
PGSC0003DMT400046000
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400063083
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49580.1	PGSC0003DMT400063083	AT5G61010.1	21798944
AT3G19100.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT3G19100.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT3G19100.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT3G19100.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT3G19100.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT3G19100.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT3G19100.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT3G19100.1	PGSC0003DMT400038381	AT4G17750.1	18466301
AT3G19100.1	PGSC0003DMT400046000	AT4G17750.1	18466301
AT3G19100.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT3G19100.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT3G19100.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT3G19100.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT3G19100.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT3G19100.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT3G19100.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108400.2.1	Tomato	cytosol	98.3	98.3
VIT_03s0063g00940.t01	Wine grape	cytosol	79.08	79.62
Os07t0619800-02	Rice	cytosol, plasma membrane	61.22	79.47
KRH71170	Soybean	cytosol	79.93	78.6
KRH50248	Soybean	cytosol	79.59	78.26
TraesCS2D01G173100.1	Wheat	cytosol	62.76	77.52
PGSC0003DMT400001990	Potato	cytosol	77.04	76.78
GSMUA_Achr1P21380_001	Banana	cytosol	77.21	74.79
Zm00001d000221_P001	Maize	cytosol	14.29	73.68
GSMUA_Achr2P07660_001	Banana	cytosol	74.49	72.16
Zm00001d006885_P002	Maize	cytosol	69.05	70.73
EER99712	Sorghum	cytosol	72.11	70.55
PGSC0003DMT400026076	Potato	cytosol	76.36	70.05
TraesCS2A01G165800.1	Wheat	cytosol, plastid	71.43	69.65
TraesCS2B01G191800.1	Wheat	cytosol	71.43	69.54
CDX95464	Canola	cytosol, plastid	69.73	69.26
PGSC0003DMT400021598	Potato	mitochondrion	67.52	69.16
Bra022388.1-P	Field mustard	cytosol	70.07	69.13
CDX92303	Canola	cytosol	70.07	69.13
AT3G19100.1	Thale cress	cytosol	70.41	69.12
CDX99267	Canola	cytosol	69.9	68.96
Bra037539.1-P	Field mustard	cytosol, plastid	69.56	68.86
CDY18568	Canola	cytosol, plastid	69.56	68.86
AT1G49580.1	Thale cress	cytosol	70.58	68.48
CDX82311	Canola	cytosol	68.37	67.91
CDX77233	Canola	cytosol, plastid	68.03	67.68
CDY16510	Canola	cytosol, plastid	68.54	67.62
CDY22990	Canola	cytosol	68.2	67.51
Bra014201.1-P	Field mustard	cytosol, plastid	68.37	65.58
Zm00001d022166_P001	Maize	cytosol	63.1	64.75
Bra001734.1-P	Field mustard	cytosol, plastid	66.5	59.88
PGSC0003DMT400008340	Potato	cytosol	60.71	59.7
HORVU2Hr1G030520.1	Barley	cytosol	41.5	49.29
PGSC0003DMT400009177	Potato	plastid	43.54	45.39
PGSC0003DMT400058126	Potato	plastid	43.37	44.89
PGSC0003DMT400021055	Potato	cytosol	34.86	39.12
PGSC0003DMT400027809	Potato	cytosol	34.01	37.52
PGSC0003DMT400083474	Potato	cytosol	33.84	37.41
PGSC0003DMT400034291	Potato	cytosol	33.5	36.62
PGSC0003DMT400069175	Potato	plastid	32.99	36.19

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:102602145	MapMan:18.4.5.4	MapMan:18.4.5.5	Gene3D:3.30.200.20
InterPro:EF-hand-dom_pair	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CFG2
PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400025808	PGSC:PGSC0003DMG400025808	EnsemblPlants:PGSC0003DMT400066365	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24349	PANTHER:PTHR24349:SF115	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295D08C	RefSeq:XP_006346445.1	SEG:seg

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025808]

Coordinates

chr1:+:84803407..84809194

Molecular Weight (calculated)

65803.3 Da

IEP (calculated)

9.360

GRAVY (calculated)

-0.331

Length

588 amino acids

Sequence
(BLAST)

001: MGACTSKPPR PNPYSPQEIL PPPETPNVAE TQKENEAKKS PFFPFYSPSP ARFFLSKKSP ARQSSASKSA NSTPARLFKR PFPPPSPAKH IKALLLRRHG
101: SVKPNAAAIP EGEETEGANL DKSFGFSKQF ASKYEIGEEV GRGHFGYTCS AIVKKGELKG QKVAVKVIPK AKMTTAISIE DVRREVKILR ALTGHNNLIQ
201: FHEAFEDRDN VYIVMELCQG GELLDRILAR GGKYSEEDAK DVMVQILNVV AFCHLQGVVH RDLKPENFLF LSKDESSPLK AIDFGLSDVV RPDEKLNDIV
301: GSAYYVAPEV LHRSYGIEAD VWSIGVISYI LLCGSRPFWA RTESGIFRAV LKADPTYDEA PWPTLTSEAK DFVKRLLNKD PRKRMSAAQA LCHPWMRNHS
401: GAKLPLDILI FRLMKAYMRS SSLRKAALRA LSKTLTADEL FYLKEQFALM EPDKNGNIKL ENIRSALMKY GTDAMKESRI PDFLASLNAL QYRKMDFEEF
501: CAAALSVHQL EALERWEQHA RCAYEIFDKD GNRAIVIEEL ASELGLGPSI PVHAVLNDWI RHTDGKLSFL GFVKLLHGPS TRGLAKVQ

Best Arabidopsis Sequence Match ( AT3G50530.1 )
(BLAST)

001: MGLCTSKPNS SNSDQTPARN SPLPASESVK PSSSSVNGED QCVTTTNNEG KKSPFFPFYS PSPAHYFFSK KTPARSPATN STNSTPKRFF KRPFPPPSPA
101: KHIRAVLARR HGSVKPNSSA IPEGSEAEGG GVGLDKSFGF SKSFASKYEL GDEVGRGHFG YTCAAKFKKG DNKGQQVAVK VIPKAKMTTA IAIEDVRREV
201: KILRALSGHN NLPHFYDAYE DHDNVYIVME LCEGGELLDR ILSRGGKYTE EDAKTVMIQI LNVVAFCHLQ GVVHRDLKPE NFLFTSKEDT SQLKAIDFGL
301: SDYVRPDERL NDIVGSAYYV APEVLHRSYS TEADIWSVGV IVYILLCGSR PFWARTESGI FRAVLKADPS FDDPPWPLLS SEARDFVKRL LNKDPRKRLT
401: AAQALSHPWI KDSNDAKVPM DILVFKLMRA YLRSSSLRKA ALRALSKTLT VDELFYLREQ FALLEPSKNG TISLENIKSA LMKMATDAMK DSRIPEFLGQ
501: LSALQYRRMD FEEFCAAALS VHQLEALDRW EQHARCAYEL FEKEGNRPIM IDELASELGL GPSVPVHAVL HDWLRHTDGK LSFLGFVKLL HGVSSRTIKA
601: H

Arabidopsis Description

CRKCDPK-related kinase [Source:TAIR;Acc:AT3G50530]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.