Factsheet for PGSC0003DMT400046000

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021598
PGSC0003DMT400066365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	PGSC0003DMT400021598	AT2G41140.1	18466301
AT4G17750.1	PGSC0003DMT400066365	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005170.2.1	Tomato	nucleus	90.35	87.1
VIT_02s0012g01810.t01	Wine grape	nucleus	58.27	59.68
KRH07474	Soybean	nucleus	57.68	57.45
KRH74387	Soybean	nucleus	54.72	56.73
PGSC0003DMT400038381	Potato	nucleus	55.31	56.43
KRH39566	Soybean	nucleus	54.53	55.4
GSMUA_Achr4P04500_001	Banana	nucleus	46.85	54.21
GSMUA_Achr3P27600_001	Banana	nucleus	43.7	52.11
AT1G32330.1	Thale cress	nucleus	49.21	51.55
Os03t0854500-01	Rice	nucleus	50.59	50.79
CDX78797	Canola	nucleus	41.54	49.07
Bra040179.1-P	Field mustard	nucleus	41.54	48.84
CDY60785	Canola	nucleus	41.34	48.05
Bra023258.1-P	Field mustard	nucleus	45.87	47.84
EER93074	Sorghum	nucleus	49.61	47.82
CDX93842	Canola	nucleus	45.67	47.64
TraesCS4A01G322300.1	Wheat	nucleus	48.23	47.02
CDY01288	Canola	nucleus	45.47	46.95
Zm00001d034886_P001	Maize	nucleus	48.62	46.87
TraesCS5D01G553300.1	Wheat	nucleus	48.03	46.74
PGSC0003DMT400008199	Potato	nucleus	45.08	46.54
TraesCS5B01G556200.1	Wheat	nucleus	48.03	46.12
AT4G17750.1	Thale cress	nucleus	44.29	45.45
Bra035507.1-P	Field mustard	nucleus	37.2	44.26
GSMUA_Achr4P17040_001	Banana	nucleus	42.32	44.15
PGSC0003DMT400069550	Potato	nucleus	41.14	43.45
Zm00001d012823_P001	Maize	nucleus	47.44	43.35
HORVU5Hr1G123770.1	Barley	nucleus	47.83	42.33
CDY44649	Canola	nucleus	38.78	41.47
PGSC0003DMT400021234	Potato	nucleus	26.97	38.81
PGSC0003DMT400049793	Potato	nucleus	26.77	37.36
PGSC0003DMT400041944	Potato	nucleus	25.2	37.21
PGSC0003DMT400049795	Potato	nucleus	25.98	36.67
PGSC0003DMT400016511	Potato	nucleus	25.79	36.19
CDX84097	Canola	nucleus	17.72	33.46
PGSC0003DMT400044683	Potato	nucleus	25.39	31.31
PGSC0003DMT400071487	Potato	nucleus	24.8	31.27
PGSC0003DMT400082752	Potato	nucleus	21.65	30.47
PGSC0003DMT400011871	Potato	nucleus	28.15	29.92
PGSC0003DMT400001025	Potato	nucleus	19.68	27.17
PGSC0003DMT400006917	Potato	nucleus	23.82	24.35

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:M1BII2
PFAM:PF00447	EnsemblPlantsGene:PGSC0003DMG400017846	PGSC:PGSC0003DMG400017846	EnsemblPlants:PGSC0003DMT400046000	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000296C624	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Heat shock factor protein HSF8 [Source:PGSC_GENE;Acc:PGSC0003DMG400017846]

Coordinates

chr8:-:4148142..4154456

Molecular Weight (calculated)

56258.0 Da

IEP (calculated)

4.963

GRAVY (calculated)

-0.658

Length

508 amino acids

Sequence
(BLAST)

001: MPSANAPPPF LVKTYDMVDD PSTDKIVSWS PTNNSFVVWD PPEFAKDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKSISRRK
101: PAHGHAQQQQ QPHGHAQQQT QPPGHSASVG ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQTTDN QLQGMVQRLQ GMEQRQQQMM SFLAKAVNSP
201: GFLAQFVQQQ NESNKRIAEG SKKRRIKQDI ESQDQSVTPA DGQIVKYQPG INEAAKAMFR ELSKLDSSPR LENFSNGPES FLIGDGSPQS NASSARVSGV
301: TLQEVPPTSG QPLLNTASAI AGQSLLPATC EIHSSHLGTS SEIVNNQFSD MIPLVGGQNL HPGSLSASDI IMPELSQLQG ILPENNIDMI GSAMEHDSFM
401: DTSAVEGVNG KMGLDIGSFS PDPHIDWQSG LLDDIQEFPS VGDPFWEKFL QSPSPGETEE MDSAAMDDDI SNTSETKPQI NGWDKTQNME HLTEQMGATN
501: IKQQKSMI

Best Arabidopsis Sequence Match ( AT1G32330.2 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.