Factsheet for Zm00001d034886_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000221_P001
Zm00001d006885_P002
Zm00001d007029_P001
Zm00001d010529_P001
Zm00001d012420_P001
Zm00001d013856_P001
Zm00001d022166_P001
Zm00001d022305_P001
Zm00001d028630_P005
Zm00001d029264_P004
Zm00001d042922_P002
Zm00001d047428_P001
Zm00001d048687_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	Zm00001d013856_P001	AT1G55520.1	9801140
AT4G17750.1	Zm00001d007029_P001	AT2G41140.1	18466301
AT4G17750.1	Zm00001d022305_P001	AT2G41140.1	18466301
AT4G17750.1	Zm00001d029264_P004	AT2G41140.1	18466301
AT4G17750.1	Zm00001d047428_P001	AT2G41140.1	18466301
AT4G17750.1	Zm00001d010529_P001	AT3G12580.1	11807141
AT4G17750.1	Zm00001d012420_P001	AT3G12580.1	11807141
AT4G17750.1	Zm00001d028630_P005	AT3G12580.1	11807141
AT4G17750.1	Zm00001d042922_P002	AT3G12580.1	11807141
AT4G17750.1	Zm00001d013856_P001	AT3G13445.1	9801140
AT4G17750.1	Zm00001d000221_P001	AT3G19100.1	18466301
AT4G17750.1	Zm00001d006885_P002	AT3G19100.1	18466301
AT4G17750.1	Zm00001d022166_P001	AT3G19100.1	18466301
AT4G17750.1	Zm00001d048687_P002	AT5G02500.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93074	Sorghum	nucleus	89.75	89.75
Os03t0854500-01	Rice	nucleus	74.95	78.06
Zm00001d012823_P001	Maize	nucleus	80.08	75.9
TraesCS4A01G322300.1	Wheat	nucleus	73.24	74.09
TraesCS5D01G553300.1	Wheat	nucleus	72.68	73.37
TraesCS5B01G556200.1	Wheat	nucleus	72.68	72.4
HORVU5Hr1G123770.1	Barley	nucleus	70.97	65.16
GSMUA_Achr4P04500_001	Banana	nucleus	49.91	59.91
GSMUA_Achr3P27600_001	Banana	nucleus	44.97	55.63
VIT_02s0012g01810.t01	Wine grape	nucleus	48.58	51.61
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	48.2	49.61
KRH07474	Soybean	nucleus	47.63	49.22
KRH74387	Soybean	nucleus	45.73	49.18
PGSC0003DMT400046000	Potato	nucleus	46.87	48.62
KRH39566	Soybean	nucleus	45.92	48.4
Solyc03g097120.2.1	Tomato	nucleus	44.78	48.07
PGSC0003DMT400008199	Potato	nucleus	44.4	47.56
CDX85486	Canola	nucleus	39.66	47.29
KRH77766	Soybean	nucleus	41.37	46.98
CDY38085	Canola	nucleus	38.9	46.7
Solyc08g005170.2.1	Tomato	nucleus	46.68	46.68
Bra023584.1-P	Field mustard	nucleus	39.09	46.61
Bra021381.1-P	Field mustard	nucleus	40.04	46.48
CDY58547	Canola	nucleus	39.85	46.26
Bra032023.1-P	Field mustard	nucleus	39.85	46.05
AT3G02990.1	Thale cress	nucleus	40.61	45.73
Bra040179.1-P	Field mustard	nucleus	37.38	45.6
CDX78797	Canola	nucleus	37.19	45.58
CDY60785	Canola	nucleus	37.76	45.54
CDX92026	Canola	nucleus	38.71	45.54
AT5G16820.2	Thale cress	nucleus	41.37	45.32
KRH27709	Soybean	nucleus	39.85	45.26
Bra001071.1-P	Field mustard	nucleus	38.9	45.25
PGSC0003DMT400038381	Potato	nucleus	42.69	45.18
Solyc08g076590.2.1	Tomato	nucleus	41.94	45.1
CDX74228	Canola	nucleus	38.9	45.05
AT1G32330.1	Thale cress	nucleus	41.37	44.95
CDX93842	Canola	nucleus	41.18	44.56
Bra023258.1-P	Field mustard	nucleus	41.18	44.56
CDY01288	Canola	nucleus	40.99	43.9
PGSC0003DMT400069550	Potato	nucleus	40.04	43.87
Solyc06g072750.2.1	Tomato	nucleus	40.04	43.78
CDY28731	Canola	nucleus	36.05	43.58
AT4G17750.1	Thale cress	nucleus	40.61	43.23
Zm00001d032923_P002	Maize	nucleus	28.84	42.58
CDY16977	Canola	nucleus	34.91	41.72
Zm00001d018941_P001	Maize	nucleus	29.41	41.33
Bra008593.1-P	Field mustard	nucleus	37.38	40.79
CDX69418	Canola	nucleus	37.38	40.45
Bra035507.1-P	Field mustard	nucleus	32.45	40.05
CDY44649	Canola	nucleus	34.16	37.89
Zm00001d033987_P001	Maize	nucleus	25.81	36.66
Zm00001d046299_P001	Maize	nucleus	18.41	36.33
Zm00001d043536_P001	Maize	nucleus	16.89	35.74
Zm00001d027757_P001	Maize	nucleus	25.81	35.42
Zm00001d016255_P001	Maize	nucleus	16.89	34.63
Zm00001d044168_P001	Maize	nucleus	19.92	31.72
Zm00001d012749_P001	Maize	nucleus	25.62	31.18
Zm00001d046204_P001	Maize	nucleus	21.44	30.96
CDX84097	Canola	nucleus	15.18	29.74
Zm00001d048041_P004	Maize	nucleus	25.05	29.2
Zm00001d010812_P001	Maize	nucleus	24.67	28.95
Zm00001d011406_P001	Maize	nucleus	20.68	28.17
Zm00001d016674_P001	Maize	nucleus	27.13	28.15
Zm00001d038746_P001	Maize	nucleus	24.29	27.29
Zm00001d044259_P001	Maize	plastid	18.41	25.73
Zm00001d016520_P001	Maize	nucleus	25.62	25.57
Zm00001d034433_P003	Maize	nucleus	28.46	24.15

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	UniProt:A0A1D6LC63	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
ProteinID:ONM11680.1	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002214D16	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d034886
EnsemblPlants:Zm00001d034886_P001	EnsemblPlants:Zm00001d034886_T001	SEG:seg	:	:	:

Description

HSF-transcription factor 5Heat stress transcription factor A-1a

Coordinates

chr1:+:304715056..304719918

Molecular Weight (calculated)

56727.7 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.446

Length

527 amino acids

Sequence
(BLAST)

001: MQGGVMAHAA AAAAAASTVT TAVAPPVTAH AVAVAPPVTA HAAAAAGNGS ATAAPPPPFL MKTYEVVDDP ATDDVISWGP GNNSFIVWNT PEFARDLLPK
101: YFKHSNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH LLKTINRRKP SLQGNSQPQQ PQSQNAPVPS CVEVGKFGLE EEIERLKRDK NVLMQELVRL
201: RQQQQTTDHQ LQTLGKRLQG MESRQQQMMS FLAKAMQSPG FLAQFVQQNE KSRRRIVAAN KKRRLPRQDG GLDSESAAAS LDGQIIKYQP LINEAAKAML
301: RKILKLDSSH RLESMGNSEN GNFLLENYMP GAQAFESSSS TRNSGVTLSE VSANPGLPYG GGGGTSSGLS AICPPEIQCP VVMDNMSSNQ VPSMSAVPPV
401: SKATIDMGIP EFSALADLVN EGSVDIPGGA FEMPGPEFPL PEGDDSVPIE TDETMYNNND ETQSLPGIID SFWEQFLVGS PLSADNDEVD SGSPQENGWS
501: KVGNIGDLTE QMGLLSSTNH RDSGNGL

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.