Factsheet for Zm00001d013856_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012823_P001
Zm00001d034886_P001
Zm00001d045954_P004
Zm00001d046579_P019

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	Zm00001d046579_P019	AT1G32750.1	17340043
AT1G55520.1	Zm00001d012823_P001	AT4G17750.1	9801140
AT1G55520.1	Zm00001d034886_P001	AT4G17750.1	9801140
AT1G55520.1	Zm00001d045954_P004	AT5G23080.1	16024589
AT3G13445.1	Zm00001d046579_P019	AT1G32750.1	17340043
AT3G13445.1	Zm00001d012823_P001	AT4G17750.1	9801140
AT3G13445.1	Zm00001d034886_P001	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011920.1-P	Field mustard	nucleus	52.56	41.0
CDY08246	Canola	nucleus	52.56	41.0
AT1G55520.1	Thale cress	nucleus	52.56	41.0
CDY26099	Canola	nucleus	52.56	41.0
GSMUA_Achr6P23210_001	Banana	nucleus	52.56	41.0
Solyc01g028930.2.1	Tomato	nucleus	53.21	40.89
AT3G13445.1	Thale cress	nucleus	51.92	40.5
Bra027434.1-P	Field mustard	nucleus	51.92	40.5
Bra030855.1-P	Field mustard	nucleus	51.28	40.0
CDY02435	Canola	nucleus	51.28	40.0
CDY10555	Canola	nucleus	51.28	40.0
Zm00001d033472_P004	Maize	nucleus	51.92	37.67
GSMUA_Achr1P26830_001	Banana	nucleus	52.56	37.61
KRH69926	Soybean	cytosol, nucleus, plastid	29.49	37.4
Zm00001d027501_P001	Maize	mitochondrion, nucleus	33.97	36.81
GSMUA_Achr7P01480_001	Banana	cytosol, nucleus, plasma membrane	53.21	36.09
VIT_06s0004g00180.t01	Wine grape	nucleus	51.28	33.61
CDY56078	Canola	nucleus	26.92	32.56
GSMUA_Achr5P08990_001	Banana	nucleus	51.92	28.52
CDY23601	Canola	mitochondrion, nucleus, plastid	51.92	25.47
Zm00001d013631_P001	Maize	nucleus	51.92	20.66
Zm00001d019598_P002	Maize	nucleus	19.87	10.26
Zm00001d029737_P001	Maize	nucleus, plasma membrane, plastid	6.41	9.43

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	UniProt:A0A1D6GMS0	ProteinID:AQK64581.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	PFAM:PF00352	PRINTS:PR00686
PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_dom_sf	UniParc:UPI000843A9F8
EnsemblPlantsGene:Zm00001d013856	EnsemblPlants:Zm00001d013856_P001	EnsemblPlants:Zm00001d013856_T001	SEG:seg	:	:

Description

TATA-box-binding protein 2

Coordinates

chr5:-:22795868..22800236

Molecular Weight (calculated)

16877.5 Da

IEP (calculated)

10.296

GRAVY (calculated)

-0.065

Length

156 amino acids

Sequence
(BLAST)

001: MNGAHESGVP SGIVPNLQNI VSTVNLDCKV DLQHVANSAR NAEYNPRRFG AAIMRIREPK TTALIFATGK MFARIVQKLG FPARFKDFKV QNIVGSCDLK
101: FPIRLEGLAL ASGLSATKQD NLAKETGWLL VEQNPAMKGG FRDGGTELAA FNFAVA

Best Arabidopsis Sequence Match ( AT1G55520.1 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.