Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16412 | Sorghum | nucleus | 83.04 | 95.5 |
| GSMUA_Achr6P23210_001 | Banana | nucleus | 82.61 | 95.0 |
| TraesCS4A01G298000.1 | Wheat | nucleus | 82.17 | 94.5 |
| TraesCS4D01G014000.2 | Wheat | nucleus | 82.17 | 94.5 |
| TraesCS5D01G027800.3 | Wheat | nucleus | 80.87 | 93.0 |
| TraesCS5A01G022000.1 | Wheat | nucleus | 80.87 | 93.0 |
| Os03t0657000-01 | Rice | nucleus | 81.74 | 92.61 |
| TraesCS5B01G018500.1 | Wheat | nucleus | 80.0 | 91.54 |
| Os12t0580300-01 | Rice | nucleus | 80.87 | 89.42 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 82.17 | 86.7 |
| VIT_06s0004g00180.t01 | Wine grape | nucleus | 83.48 | 80.67 |
| GSMUA_Achr10P... | Banana | nucleus | 71.3 | 78.85 |
| TraesCS4B01G015700.2 | Wheat | nucleus | 74.78 | 76.79 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 66.96 | 74.4 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 81.74 | 66.2 |
| HORVU4Hr1G002400.5 | Barley | golgi | 82.17 | 56.08 |
| Zm00001d013856_P001 | Maize | nucleus | 36.09 | 53.21 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G01480_001 | EnsemblPlants:GSMUA_Achr7P01480_001 | EnsemblPlants:GSMUA_Achr7T01480_001 | InterPro:IPR012295 | UniProt:M0TDT8 |
| HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 |
| SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI000294F4C8 |
Description
TATA-box-binding protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G01480_001]
Coordinates
chr7:+:1173344..1180433
Molecular Weight (calculated)
25867.2 Da
IEP (calculated)
10.425
GRAVY (calculated)
0.120
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQELVGSQ PVELSKHPSG IIPTLQKKYF PVLILIKRSF IGAMWLFVNV VLLNGNIVST VNLDCKLDLK AIALQARNAE YNPKRFAAVI MRIREPKTTA
101: LIFASGKMVC TGAKSEHQSK LAARKYARII QKLGFPAKFK DFKVQNIVGS CDVKFPIRLE GLAYAHGAFS SYEPELFPGL IYRMKQPKIV LLIFVSGKIV
201: LTGAKVRDET YTAFENIYPV LAEFRKVQQW
101: LIFASGKMVC TGAKSEHQSK LAARKYARII QKLGFPAKFK DFKVQNIVGS CDVKFPIRLE GLAYAHGAFS SYEPELFPGL IYRMKQPKIV LLIFVSGKIV
201: LTGAKVRDET YTAFENIYPV LAEFRKVQQW
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.