Factsheet for Os03t0657000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0854500-01
Os06t0489200-01
Os06t0645700-01
Os06t0645800-01
Os06t0645901-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	Os06t0645700-01	AT1G32750.1	17340043
AT1G55520.1	Os06t0645800-01	AT1G32750.1	17340043
AT1G55520.1	Os06t0645901-00	AT1G32750.1	17340043
AT1G55520.1	Os03t0854500-01	AT4G17750.1	9801140
AT1G55520.1	Os06t0489200-01	AT5G23080.1	16024589
AT3G13445.1	Os06t0645700-01	AT1G32750.1	17340043
AT3G13445.1	Os06t0645800-01	AT1G32750.1	17340043
AT3G13445.1	Os06t0645901-00	AT1G32750.1	17340043
AT3G13445.1	Os03t0854500-01	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94816	Soybean	cytosol, mitochondrion, nucleus	58.62	98.35
TraesCS4A01G298000.1	Wheat	nucleus	96.06	97.5
TraesCS4D01G014000.2	Wheat	nucleus	96.06	97.5
TraesCS5A01G022000.1	Wheat	nucleus	95.57	97.0
TraesCS5D01G027800.3	Wheat	nucleus	95.57	97.0
TraesCS5B01G018500.1	Wheat	nucleus	95.57	96.52
EES16412	Sorghum	nucleus	94.58	96.0
Os12t0580300-01	Rice	nucleus	98.03	95.67
KRH40768	Soybean	nucleus	94.09	95.5
KRH00416	Soybean	nucleus	93.6	95.0
GSMUA_Achr6P23210_001	Banana	nucleus	93.1	94.5
KRH08285	Soybean	nucleus	93.1	94.5
KRH65451	Soybean	nucleus	93.1	94.5
Solyc01g028930.2.1	Tomato	nucleus	93.6	93.6
CDY26099	Canola	nucleus	90.64	92.0
CDY08246	Canola	nucleus	90.64	92.0
Bra011920.1-P	Field mustard	nucleus	90.64	92.0
CDY10555	Canola	nucleus	90.15	91.5
CDY02435	Canola	nucleus	90.15	91.5
Bra030855.1-P	Field mustard	nucleus	90.15	91.5
AT1G55520.1	Thale cress	nucleus	90.15	91.5
Bra027434.1-P	Field mustard	nucleus	89.16	90.5
AT3G13445.1	Thale cress	nucleus	89.16	90.5
KRG94819	Soybean	nucleus	34.98	89.87
Zm00001d033472_P004	Maize	nucleus	93.6	88.37
GSMUA_Achr1P26830_001	Banana	nucleus	92.61	86.24
CDY56078	Canola	nucleus	52.22	82.17
GSMUA_Achr7P01480_001	Banana	cytosol, nucleus, plasma membrane	92.61	81.74
VIT_06s0004g00180.t01	Wine grape	nucleus	94.09	80.25
Os10t0432300-01	Rice	nucleus	87.19	79.37
TraesCS4B01G015700.2	Wheat	nucleus	87.19	79.02
KRH69926	Soybean	cytosol, nucleus, plastid	41.87	69.11
GSMUA_Achr5P08990_001	Banana	nucleus	91.63	65.49
HORVU4Hr1G002400.5	Barley	golgi	97.04	58.46
CDY23601	Canola	mitochondrion, nucleus, plastid	89.16	56.92
Zm00001d013631_P001	Maize	nucleus	92.61	47.96

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:4333619	ProteinID:AAP50993.1	ProteinID:ABF97976.1
EMBL:AF464907	EMBL:AK061103	ProteinID:BAF12726.1	ProteinID:BAS85567.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	HAMAP:MF_00408	EnsemblPlantsGene:Os03g0657000	EnsemblPlants:Os03t0657000-01
PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	UniProt:Q8W0W4
SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI00001A3B21
RefSeq:XP_015631681.1	SEG:seg	:	:	:	:

Description

TATA binding protein 2TATA-binding protein TBP2. (Os03t0657000-01)

Coordinates

chr3:+:25634617..25639033

Molecular Weight (calculated)

22482.7 Da

IEP (calculated)

10.138

GRAVY (calculated)

0.007

Length

203 amino acids

Sequence
(BLAST)

001: MAAEAAAALE GSEPVDLAKH PSGIIPTLQN IVSTVNLDCK LDLKAIALQA RNAEYNPKRF AAVIMRIREP KTTALIFASG KMVCTGAKSE QQSKLAARKY
101: ARIIQKLGFP AKFKDFKIQN IVGSCDVKFP IRLEGLAYSH GAFSSYEPEL FPGLIYRMKQ PKIVLLIFVS GKIVLTGAKV RDETYTAFEN IYPVLTEFRK
201: VQQ

Best Arabidopsis Sequence Match ( AT3G13445.1 )
(BLAST)

001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ

Arabidopsis Description

TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.