Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0657000-01 | |
| Os12t0580300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23080.1 | Os03t0657000-01 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | Os12t0580300-01 | AT1G55520.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G231500.1 | Wheat | nucleus | 75.61 | 75.08 |
| TraesCS7B01G129900.1 | Wheat | nucleus | 75.51 | 74.97 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 75.3 | 74.77 |
| Zm00001d045954_P004 | Maize | nucleus | 73.07 | 72.7 |
| KXG19969 | Sorghum | nucleus | 72.26 | 71.53 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 63.62 | 61.19 |
| VIT_17s0000g04410.t01 | Wine grape | cytosol | 4.88 | 60.76 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 53.46 | 47.52 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 47.46 | 46.84 |
| AT5G23080.1 | Thale cress | nucleus | 44.0 | 46.56 |
| Solyc03g114410.2.1 | Tomato | nucleus | 44.92 | 44.92 |
| CDX87186 | Canola | nucleus | 43.19 | 44.88 |
| CDY16838 | Canola | nucleus | 43.29 | 44.84 |
| Bra035958.1-P | Field mustard | nucleus | 43.29 | 44.84 |
| CDY02204 | Canola | nucleus | 42.68 | 44.63 |
| CDY67704 | Canola | nucleus | 42.78 | 44.55 |
| KRH03843 | Soybean | nucleus | 44.61 | 43.73 |
| KRH56717 | Soybean | nucleus | 44.51 | 43.2 |
| Bra013015.1-P | Field mustard | nucleus | 33.44 | 41.02 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.10.2.1.4 | EntrezGene:4341077 | EMBL:AK103574 | ProteinID:BAD37703.1 | ProteinID:BAF19586.1 |
| ProteinID:BAS97851.1 | InterPro:DUF1604 | ProteinID:EEE65748.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010087 | GO:GO:0019538 | GO:GO:0030422 | GO:GO:0031047 | GO:GO:0035196 |
| GO:GO:0040007 | GO:GO:0040008 | GO:GO:0040029 | GO:GO:0070878 | GO:GO:0070883 | InterPro:G_patch_dom |
| InterPro:IPR000061 | InterPro:IPR000467 | InterPro:IPR035967 | EnsemblPlantsGene:Os06g0489200 | EnsemblPlants:Os06t0489200-01 | PFAM:PF01805 |
| PFAM:PF07713 | PFscan:PS50128 | PFscan:PS50174 | PANTHER:PTHR13384 | PANTHER:PTHR13384:SF19 | UniProt:Q67VW6 |
| SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0000426364 | RefSeq:XP_015643958.1 |
| SEG:seg | : | : | : | : | : |
Description
Protein of unknown function DUF1604 domain containing protein. (Os06t0489200-01)
Coordinates
chr6:-:16825601..16836194
Molecular Weight (calculated)
111305.0 Da
IEP (calculated)
7.229
GRAVY (calculated)
-1.045
Length
984 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFDDDDEDL VVYGTPIERE EDTSARKRRA VAEAGQLRAL PAWKQEVRDE EGRRRFHGAF TGGFSAGYYN TVGTKEGWTP QTFTSSRKNR AEMKKQSIYS
101: FLDEEDIKDM GGNALETSQQ YDTFGFTATE HARKQASKEQ KERPSAIPGP IPDELVVPAT TSIGVKLLMK MGWRQGRSIR DAHADSLYES RREARKAFLA
201: LSGTKTGGQK IQVDSHKSDK DDGATESFEE LHASGNTPVY VLHPKQDLHG LGFDPFKHAP EFKDRKRLQK SARDRNRSDV SMRGSLLISN SGQYAPGFGI
301: GALEELGVED EDIYASGFAY EQMEVDIEPS KTASDSNYKL EDRKRGVFLA FKIASSSEYK LERFDPPEIP SDFDGRHKFL TPRQDVNNLS DLAPPEVPAP
401: EDTSLRLLIE GCAAMVARCG KHIEDFYKEK SKTNTQFNFL NEGDGCSYYA RKLWEYQQKY IDQQKPDTVQ SKSSDKLTAE NRGKILGERP LDRSTKSSSS
501: SFPAKEAIQL QSNLADNFVK PISLDGLPEY EKPFRNDPAK QARFEQFLKD KYQGGLRPAN LIPTSTMSDV DRARERLDFE AAAETIEKGK EKKAMDPLSL
601: LGLSGINEQR FVSSTESERS IPARDEKSIY PRREEFEWRP SPILCKRFDI VDPFMGKPFH VQRPRSKMDS LIFMSESTTR TNEVESSSIA PQHTSVAGAT
701: ETEAKGAATD PEIESSSVQR PVDLYKAIFS DDSDDDMAEP LANQPVDPVK TSEDANMVLN RLVAEDFLES LGKELGLDVP PEKPTPPNVL FRSETPSTAN
801: AIGISRNRKA ITCQEIKENE SALDKEEIAN ASADVPSDNV EELGLKYEKQ EHRAEKSRSR SSHRQTQSGS LDSDSTSDQH RSRERRSRHK IRSGTPGSDS
901: SIEHHRSKKR KSHSKHRTRR SRSPYADSSD SQYTKRKHRE KRHHRTRNPD TDSSDHEYEE RHKSSSRRSS DKDRSRRRSR HHKR
101: FLDEEDIKDM GGNALETSQQ YDTFGFTATE HARKQASKEQ KERPSAIPGP IPDELVVPAT TSIGVKLLMK MGWRQGRSIR DAHADSLYES RREARKAFLA
201: LSGTKTGGQK IQVDSHKSDK DDGATESFEE LHASGNTPVY VLHPKQDLHG LGFDPFKHAP EFKDRKRLQK SARDRNRSDV SMRGSLLISN SGQYAPGFGI
301: GALEELGVED EDIYASGFAY EQMEVDIEPS KTASDSNYKL EDRKRGVFLA FKIASSSEYK LERFDPPEIP SDFDGRHKFL TPRQDVNNLS DLAPPEVPAP
401: EDTSLRLLIE GCAAMVARCG KHIEDFYKEK SKTNTQFNFL NEGDGCSYYA RKLWEYQQKY IDQQKPDTVQ SKSSDKLTAE NRGKILGERP LDRSTKSSSS
501: SFPAKEAIQL QSNLADNFVK PISLDGLPEY EKPFRNDPAK QARFEQFLKD KYQGGLRPAN LIPTSTMSDV DRARERLDFE AAAETIEKGK EKKAMDPLSL
601: LGLSGINEQR FVSSTESERS IPARDEKSIY PRREEFEWRP SPILCKRFDI VDPFMGKPFH VQRPRSKMDS LIFMSESTTR TNEVESSSIA PQHTSVAGAT
701: ETEAKGAATD PEIESSSVQR PVDLYKAIFS DDSDDDMAEP LANQPVDPVK TSEDANMVLN RLVAEDFLES LGKELGLDVP PEKPTPPNVL FRSETPSTAN
801: AIGISRNRKA ITCQEIKENE SALDKEEIAN ASADVPSDNV EELGLKYEKQ EHRAEKSRSR SSHRQTQSGS LDSDSTSDQH RSRERRSRHK IRSGTPGSDS
901: SIEHHRSKKR KSHSKHRTRR SRSPYADSSD SQYTKRKHRE KRHHRTRNPD TDSSDHEYEE RHKSSSRRSS DKDRSRRRSR HHKR
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.