Factsheet for GSMUA_Achr8P03600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P26830_001
GSMUA_Achr5P08990_001
GSMUA_Achr6P23210_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23080.1	GSMUA_Achr1P26830_001	AT1G55520.1	16024589
AT5G23080.1	GSMUA_Achr5P08990_001	AT1G55520.1	16024589
AT5G23080.1	GSMUA_Achr6P23210_001	AT1G55520.1	16024589

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g04410.t01	Wine grape	cytosol	4.34	60.76
Os06t0489200-01	Rice	nucleus	47.52	53.46
TraesCS7B01G129900.1	Wheat	nucleus	47.7	53.28
TraesCS7A01G231500.1	Wheat	nucleus	47.61	53.18
TraesCS7D01G231700.1	Wheat	nucleus	47.43	52.98
KXG19969	Sorghum	nucleus	46.52	51.81
Zm00001d045954_P004	Maize	nucleus	46.07	51.57
VIT_17s0000g04440.t01	Wine grape	nucleus	44.99	49.95
AT5G23080.1	Thale cress	nucleus	41.64	49.57
Solyc03g114410.2.1	Tomato	nucleus	42.82	48.17
CDY02204	Canola	nucleus	40.92	48.14
CDX87186	Canola	nucleus	40.83	47.73
CDY67704	Canola	nucleus	40.74	47.72
Bra035958.1-P	Field mustard	nucleus	40.83	47.58
CDY16838	Canola	nucleus	40.74	47.47
KRH56717	Soybean	nucleus	43.27	47.24
KRH03843	Soybean	nucleus	42.82	47.21
Bra013015.1-P	Field mustard	nucleus	32.34	44.64
HORVU7Hr1G047420.9	Barley	mitochondrion	37.58	40.66

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.10.2.1.4	InterPro:DUF1604	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0006397	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010087	GO:GO:0019538	GO:GO:0030422	GO:GO:0035196	GO:GO:0040029
GO:GO:0070878	GO:GO:0070883	EnsemblPlantsGene:GSMUA_Achr8G03600_001	EnsemblPlants:GSMUA_Achr8P03600_001	EnsemblPlants:GSMUA_Achr8T03600_001	InterPro:IPR000061
InterPro:IPR035967	UniProt:M0TMB2	PFAM:PF01805	PFAM:PF07713	PFscan:PS50128	PANTHER:PTHR13384
PANTHER:PTHR13384:SF19	SMART:SM00648	SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI000296146F
SEG:seg	:	:	:	:	:

Description

surp module family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G03600_001]

Coordinates

chr8:+:2451565..2470056

Molecular Weight (calculated)

124983.0 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.969

Length

1107 amino acids

Sequence
(BLAST)

0001: MDEDEEDFVF YGTPIEREED TSARKRKAVA DAGQLRSLPL WKQEVRDEEG RRRFHGAFTG GFSAGYYNTV GSKEGWTPQT FSSSRKNRAE VKQQSIYNFL
0101: DEDDLKGMGG QALETSMQFD TFGFTAAEFA RKEVEKDQLK RPSAIPGPVP DEIVIPASNS IGVKLLLKMG WRHGHSIKDT HSDSLYEARR EARKAFLAFS
0201: GNEGGAKTAK EGSHAWDSEE YAERVNNGLY TSKSMPVSNL TENKINFLTY AYLFQEYVLQ PKQDLYGLGY DPYKHAPEFR DKKRLRESKR KNHGIKSSVR
0301: GNLLSSNSGK YAPGFGIGAL EELDFEDEDI YASGFDFEQT EVDEDEPVQM IRDNIYRLED KKNDCLPGFK VASSPDYTIE RFHPPVIPVN FDPHHKFSAP
0401: LESATTIAEL PPPEVPPPED NNLKLLIDGF ATLVARCGKI FEDLSKEKNR SNPLFYFLSG GDGHNYYERK LWEEKQKSVN HLRLVEDSKS KSSTRTMTAE
0501: SRGRILGEKK LERTSNETSS AVAVKEFINL QSNLADTFTK PVSLVGLLEI AKPFKDDPAK QERFEQFLKD KYQGGLRSTQ PSGIMSENDR ARERLDFEAA
0601: AEAIEKGKKL IASSSMDQFT ALSGVVDQQF IASTGLTKHQ IPRDEDKLTN KLYPKREEFQ WRPLPILCKR FDIIDPFMGK PAPLPRPKSK METLIFMTES
0701: IKDVKSEETN TIRKDFMHIS HSESNVAEKQ LDSKEPEIEQ SSASVQKPVD LYKAIFSDDS DDDGDDSSST KVADPVKKSE GANMTLNRLV AGDFLESLGK
0801: ELGLEVPADV SGKPFKGNGS SNITETACAG EIKIPEKNER TIFPLETHEA PPETDVMASQ QRFPGSTRNT TPTGISATGL SSFARDGDDH DNGCKESADK
0901: FVSGSAGGRF SDFHKEEVDA EKTRSQARNN RSHSRYHDGR SSPDTGSSSG HQQLKKSATH TRLQRRRSRT PDTHSDGDGY QPKRNKSHSG HRWRIRTPDA
1001: DFSDDEYQQR ESRSHSRHHQ RSRTPETDSS SDPQDHFQST SRSKKLHRHE RRKKHSGHSK RKKRTSPTRD SGYDKAIIEA DDEIKIHPRS LELFYHHQPH
1101: PDSARLT

Best Arabidopsis Sequence Match ( AT5G23080.1 )
(BLAST)

001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD

Arabidopsis Description

TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.