Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G23080.1 | KRH00416 | AT1G55520.1 | 16024589 |
AT5G23080.1 | KRH08285 | AT1G55520.1 | 16024589 |
AT5G23080.1 | KRH40768 | AT1G55520.1 | 16024589 |
AT5G23080.1 | KRH65451 | AT1G55520.1 | 16024589 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH56717 | Soybean | nucleus | 86.95 | 86.09 |
VIT_17s0000g04440.t01 | Wine grape | nucleus | 57.37 | 57.77 |
CDY02204 | Canola | nucleus | 53.59 | 57.17 |
CDY67704 | Canola | nucleus | 53.78 | 57.14 |
AT5G23080.1 | Thale cress | nucleus | 52.69 | 56.88 |
CDY16838 | Canola | nucleus | 53.59 | 56.63 |
CDX87186 | Canola | nucleus | 53.39 | 56.6 |
Bra035958.1-P | Field mustard | nucleus | 53.49 | 56.53 |
Bra013015.1-P | Field mustard | nucleus | 43.53 | 54.49 |
Solyc03g114410.2.1 | Tomato | nucleus | 51.99 | 53.05 |
TraesCS7A01G231500.1 | Wheat | nucleus | 45.22 | 45.81 |
TraesCS7B01G129900.1 | Wheat | nucleus | 44.82 | 45.41 |
TraesCS7D01G231700.1 | Wheat | nucleus | 44.82 | 45.41 |
Os06t0489200-01 | Rice | nucleus | 43.73 | 44.61 |
Zm00001d045954_P004 | Maize | nucleus | 42.93 | 43.58 |
KXG19969 | Sorghum | nucleus | 42.53 | 42.96 |
GSMUA_Achr8P03600_001 | Banana | nucleus | 47.21 | 42.82 |
HORVU7Hr1G047420.9 | Barley | mitochondrion | 34.86 | 34.21 |
Protein Annotations
Gene3D:1.10.10.790 | EntrezGene:100500422 | MapMan:16.10.2.1.4 | EMBL:ACUP02010364 | InterPro:DUF1604 | EnsemblPlantsGene:GLYMA_17G123700 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 |
GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | UniProt:I1MUI3 | InterPro:IPR000061 |
InterPro:IPR035967 | EnsemblPlants:KRH03843 | ProteinID:KRH03843 | ProteinID:KRH03843.1 | PFAM:PF01805 | PFAM:PF07713 |
PFscan:PS50128 | PANTHER:PTHR13384 | PANTHER:PTHR13384:SF19 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf |
InterPro:Surp | UniParc:UPI0002969F4F | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:9854879..9867310
Molecular Weight (calculated)
113302.0 Da
IEP (calculated)
6.954
GRAVY (calculated)
-1.079
Length
1004 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESDEDDFVF YGTPIEREDD SISRKKKAIA ESSGQLRALP AWKQEVRDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFKSSRKSRA EFKEQNILNF
0101: LDEDEKTELE GCFLGTTSQF DTFGFTAAEI ARKQAEKEQK QRPSIIPGPA PDEIVVPATE SVGVKLLMKM GWSRGRSIKD SHSEALYDAR RQARRAFLAF
0201: SSDDPKLKIT GSEPIEGDVE IFPEEPVNGD AQFSKSTPVY VLNPKQDLHG LGFDPYKHAP EFREKKRSRL ASKGGGPGYS KNFSTRDSLF GLKSGKAAPG
0301: FGIGALEELD VEDEDVYATG YEFEDAYVQE VEEPSTLRLE NQRTKEQKDQ GDLRGFRVAS NSDFKMERFE APLIPKDFVP HHEFSGPLNI NRKSCEVTPP
0401: DVPPPGDGNL KLLIEGVANL VAKCGKLYED LSREKNQSNP LFNFLSGGTG HEYYARKLWE AQQKHKTSRQ LDGKMPPSVQ RLTAESRGQI LGEKPLEKSS
0501: QDLSSSVSST DIHLQFNLTD TFTESASLSE LVNVEKPFKD DPTKQERFEQ FLKEKYKGGL RSASSSLASD MSEAARAQER LSFEAAAEAI EKGRQGRGSK
0601: PLIPSSMDFI PGGVMQFTSG EVKPKKDLLA EDILKKKMYP KREEFQWRPS PLLCKRFDLI DPYMGKPPPA PRIRSKMDTL IFTSDSVKGT KVDGPVTSKK
0701: DISSLQQPTN KDITKSITEN ETEEDVEVEN IERPVDLYKA IFSDDSDDEG EDPSNRRVEN QEKKAEVANT ALSRLIAGDF LESLGKELGI EVPPDMPYPT
0801: QKSRNVAHQK DIVNEDARTD ILKSENNSVM SLNHDLPYDQ QHIAHDCEPS KGDTIDGNML ESGNNKTKGT TSQDNDSSSE EERSQKRSNR EKYDESRKDK
0901: TPVTRGRDYS SSSSLEEERS RKRSRHQRHK RHDAGSHSSS DDDRRDRHSS RSKGRRKGSS REKSRSEKHS KRHKHRKHES PNRSSRYSNE KDSSHSRKEK
1001: RRRE
0101: LDEDEKTELE GCFLGTTSQF DTFGFTAAEI ARKQAEKEQK QRPSIIPGPA PDEIVVPATE SVGVKLLMKM GWSRGRSIKD SHSEALYDAR RQARRAFLAF
0201: SSDDPKLKIT GSEPIEGDVE IFPEEPVNGD AQFSKSTPVY VLNPKQDLHG LGFDPYKHAP EFREKKRSRL ASKGGGPGYS KNFSTRDSLF GLKSGKAAPG
0301: FGIGALEELD VEDEDVYATG YEFEDAYVQE VEEPSTLRLE NQRTKEQKDQ GDLRGFRVAS NSDFKMERFE APLIPKDFVP HHEFSGPLNI NRKSCEVTPP
0401: DVPPPGDGNL KLLIEGVANL VAKCGKLYED LSREKNQSNP LFNFLSGGTG HEYYARKLWE AQQKHKTSRQ LDGKMPPSVQ RLTAESRGQI LGEKPLEKSS
0501: QDLSSSVSST DIHLQFNLTD TFTESASLSE LVNVEKPFKD DPTKQERFEQ FLKEKYKGGL RSASSSLASD MSEAARAQER LSFEAAAEAI EKGRQGRGSK
0601: PLIPSSMDFI PGGVMQFTSG EVKPKKDLLA EDILKKKMYP KREEFQWRPS PLLCKRFDLI DPYMGKPPPA PRIRSKMDTL IFTSDSVKGT KVDGPVTSKK
0701: DISSLQQPTN KDITKSITEN ETEEDVEVEN IERPVDLYKA IFSDDSDDEG EDPSNRRVEN QEKKAEVANT ALSRLIAGDF LESLGKELGI EVPPDMPYPT
0801: QKSRNVAHQK DIVNEDARTD ILKSENNSVM SLNHDLPYDQ QHIAHDCEPS KGDTIDGNML ESGNNKTKGT TSQDNDSSSE EERSQKRSNR EKYDESRKDK
0901: TPVTRGRDYS SSSSLEEERS RKRSRHQRHK RHDAGSHSSS DDDRRDRHSS RSKGRRKGSS REKSRSEKHS KRHKHRKHES PNRSSRYSNE KDSSHSRKEK
1001: RRRE
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.