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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH56717 Soybean nucleus 86.95 86.09
VIT_17s0000g04440.t01 Wine grape nucleus 57.37 57.77
CDY02204 Canola nucleus 53.59 57.17
CDY67704 Canola nucleus 53.78 57.14
AT5G23080.1 Thale cress nucleus 52.69 56.88
CDY16838 Canola nucleus 53.59 56.63
CDX87186 Canola nucleus 53.39 56.6
Bra035958.1-P Field mustard nucleus 53.49 56.53
Bra013015.1-P Field mustard nucleus 43.53 54.49
Solyc03g114410.2.1 Tomato nucleus 51.99 53.05
TraesCS7A01G231500.1 Wheat nucleus 45.22 45.81
TraesCS7B01G129900.1 Wheat nucleus 44.82 45.41
TraesCS7D01G231700.1 Wheat nucleus 44.82 45.41
Os06t0489200-01 Rice nucleus 43.73 44.61
Zm00001d045954_P004 Maize nucleus 42.93 43.58
KXG19969 Sorghum nucleus 42.53 42.96
GSMUA_Achr8P03600_001 Banana nucleus 47.21 42.82
HORVU7Hr1G047420.9 Barley mitochondrion 34.86 34.21
Protein Annotations
Gene3D:1.10.10.790EntrezGene:100500422MapMan:16.10.2.1.4EMBL:ACUP02010364InterPro:DUF1604EnsemblPlantsGene:GLYMA_17G123700
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0006139GO:GO:0006396
GO:GO:0006397GO:GO:0008150GO:GO:0008152GO:GO:0009987UniProt:I1MUI3InterPro:IPR000061
InterPro:IPR035967EnsemblPlants:KRH03843ProteinID:KRH03843ProteinID:KRH03843.1PFAM:PF01805PFAM:PF07713
PFscan:PS50128PANTHER:PTHR13384PANTHER:PTHR13384:SF19SMART:SM00648SUPFAM:SSF109905InterPro:SWAP/Surp_sf
InterPro:SurpUniParc:UPI0002969F4FSEG:seg:::
Description
hypothetical protein
Coordinates
chr17:+:9854879..9867310
Molecular Weight (calculated)
113302.0 Da
IEP (calculated)
6.954
GRAVY (calculated)
-1.079
Length
1004 amino acids
Sequence
(BLAST)
0001: MESDEDDFVF YGTPIEREDD SISRKKKAIA ESSGQLRALP AWKQEVRDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFKSSRKSRA EFKEQNILNF
0101: LDEDEKTELE GCFLGTTSQF DTFGFTAAEI ARKQAEKEQK QRPSIIPGPA PDEIVVPATE SVGVKLLMKM GWSRGRSIKD SHSEALYDAR RQARRAFLAF
0201: SSDDPKLKIT GSEPIEGDVE IFPEEPVNGD AQFSKSTPVY VLNPKQDLHG LGFDPYKHAP EFREKKRSRL ASKGGGPGYS KNFSTRDSLF GLKSGKAAPG
0301: FGIGALEELD VEDEDVYATG YEFEDAYVQE VEEPSTLRLE NQRTKEQKDQ GDLRGFRVAS NSDFKMERFE APLIPKDFVP HHEFSGPLNI NRKSCEVTPP
0401: DVPPPGDGNL KLLIEGVANL VAKCGKLYED LSREKNQSNP LFNFLSGGTG HEYYARKLWE AQQKHKTSRQ LDGKMPPSVQ RLTAESRGQI LGEKPLEKSS
0501: QDLSSSVSST DIHLQFNLTD TFTESASLSE LVNVEKPFKD DPTKQERFEQ FLKEKYKGGL RSASSSLASD MSEAARAQER LSFEAAAEAI EKGRQGRGSK
0601: PLIPSSMDFI PGGVMQFTSG EVKPKKDLLA EDILKKKMYP KREEFQWRPS PLLCKRFDLI DPYMGKPPPA PRIRSKMDTL IFTSDSVKGT KVDGPVTSKK
0701: DISSLQQPTN KDITKSITEN ETEEDVEVEN IERPVDLYKA IFSDDSDDEG EDPSNRRVEN QEKKAEVANT ALSRLIAGDF LESLGKELGI EVPPDMPYPT
0801: QKSRNVAHQK DIVNEDARTD ILKSENNSVM SLNHDLPYDQ QHIAHDCEPS KGDTIDGNML ESGNNKTKGT TSQDNDSSSE EERSQKRSNR EKYDESRKDK
0901: TPVTRGRDYS SSSSLEEERS RKRSRHQRHK RHDAGSHSSS DDDRRDRHSS RSKGRRKGSS REKSRSEKHS KRHKHRKHES PNRSSRYSNE KDSSHSRKEK
1001: RRRE
Best Arabidopsis Sequence Match ( AT5G23080.1 )
(BLAST)
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.