CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03843
KRH07474
KRH39566
KRH39697
KRH56717
KRH62676
KRH74387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	KRH39697	AT1G32750.1	17340043
AT1G55520.1	KRH62676	AT1G32750.1	17340043
AT1G55520.1	KRH07474	AT4G17750.1	9801140
AT1G55520.1	KRH39566	AT4G17750.1	9801140
AT1G55520.1	KRH74387	AT4G17750.1	9801140
AT1G55520.1	KRH03843	AT5G23080.1	16024589
AT1G55520.1	KRH56717	AT5G23080.1	16024589
AT3G13445.1	KRH39697	AT1G32750.1	17340043
AT3G13445.1	KRH62676	AT1G32750.1	17340043
AT3G13445.1	KRH07474	AT4G17750.1	9801140
AT3G13445.1	KRH39566	AT4G17750.1	9801140
AT3G13445.1	KRH74387	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65451	Soybean	nucleus	100.0	100.0
KRG94816	Soybean	cytosol, mitochondrion, nucleus	60.0	99.17
KRH40768	Soybean	nucleus	96.5	96.5
KRH00416	Soybean	nucleus	96.0	96.0
GSMUA_Achr6P23210_001	Banana	nucleus	96.0	96.0
Solyc01g028930.2.1	Tomato	nucleus	97.0	95.57
EES16412	Sorghum	nucleus	95.0	95.0
TraesCS4A01G298000.1	Wheat	nucleus	94.5	94.5
TraesCS4D01G014000.2	Wheat	nucleus	94.5	94.5
TraesCS5A01G022000.1	Wheat	nucleus	93.5	93.5
TraesCS5D01G027800.3	Wheat	nucleus	93.5	93.5
Os03t0657000-01	Rice	nucleus	94.5	93.1
CDY26099	Canola	nucleus	93.0	93.0
CDY10555	Canola	nucleus	93.0	93.0
CDY08246	Canola	nucleus	93.0	93.0
CDY02435	Canola	nucleus	93.0	93.0
Bra030855.1-P	Field mustard	nucleus	93.0	93.0
Bra011920.1-P	Field mustard	nucleus	93.0	93.0
AT1G55520.1	Thale cress	nucleus	92.5	92.5
TraesCS5B01G018500.1	Wheat	nucleus	92.5	92.04
AT3G13445.1	Thale cress	nucleus	91.5	91.5
KRG94819	Soybean	nucleus	36.0	91.14
Bra027434.1-P	Field mustard	nucleus	91.0	91.0
Os12t0580300-01	Rice	nucleus	94.5	90.87
GSMUA_Achr1P26830_001	Banana	nucleus	95.5	87.61
CDY56078	Canola	nucleus	53.0	82.17
VIT_06s0004g00180.t01	Wine grape	nucleus	97.0	81.51
TraesCS4B01G015700.2	Wheat	nucleus	85.5	76.34
KRH69926	Soybean	cytosol, nucleus, plastid	46.5	75.61
GSMUA_Achr5P08990_001	Banana	nucleus	94.5	66.55
CDY23601	Canola	mitochondrion, nucleus, plastid	91.0	57.23
HORVU4Hr1G002400.5	Barley	golgi	94.5	56.08

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:547805	UniProt:A0A0R0FQI0	EnsemblPlantsGene:GLYMA_16G140200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	ProteinID:KRH08284.1	EnsemblPlants:KRH08285
ProteinID:KRH08285	ProteinID:KRH08285.1	ProteinID:KRH08286.1	ProteinID:KRH65450.1	ProteinID:KRH65451.1	EMBL:L28002
HAMAP:MF_00408	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36
UniProt:Q42808	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic
UniParc:UPI0000136C44	:	:	:	:	:

Description

TBP1hypothetical protein

Coordinates

chr16:-:29758574..29763054

Molecular Weight (calculated)

22371.5 Da

IEP (calculated)

10.228

GRAVY (calculated)

-0.137

Length

200 amino acids

Sequence
(BLAST)

001: MADQGLEGSQ PVDLQKHPSG IVPTLQNIVS TVNLDCKLDL KTIALQARNA EYNPKRFAAV IMRIRDPKTT ALIFASGKMV CTGAKSEQQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVRDE TYTAFENIYP VLTEFRKNQQ

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.