Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g114410.2.1 | |
| Solyc07g006820.2.1 | |
| Solyc08g005170.2.1 | |
| Solyc08g076590.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P23210_001 | Banana | nucleus | 96.06 | 97.5 |
| KRH08285 | Soybean | nucleus | 95.57 | 97.0 |
| KRH40768 | Soybean | nucleus | 95.57 | 97.0 |
| KRH65451 | Soybean | nucleus | 95.57 | 97.0 |
| KRH00416 | Soybean | nucleus | 95.07 | 96.5 |
| EES16412 | Sorghum | nucleus | 94.09 | 95.5 |
| TraesCS4D01G014000.2 | Wheat | nucleus | 93.6 | 95.0 |
| TraesCS4A01G298000.1 | Wheat | nucleus | 93.6 | 95.0 |
| TraesCS5D01G027800.3 | Wheat | nucleus | 93.1 | 94.5 |
| AT1G55520.1 | Thale cress | nucleus | 93.1 | 94.5 |
| CDY26099 | Canola | nucleus | 93.1 | 94.5 |
| CDY08246 | Canola | nucleus | 93.1 | 94.5 |
| TraesCS5A01G022000.1 | Wheat | nucleus | 93.1 | 94.5 |
| Bra011920.1-P | Field mustard | nucleus | 93.1 | 94.5 |
| Os03t0657000-01 | Rice | nucleus | 93.6 | 93.6 |
| TraesCS5B01G018500.1 | Wheat | nucleus | 92.12 | 93.03 |
| AT3G13445.1 | Thale cress | nucleus | 91.63 | 93.0 |
| CDY10555 | Canola | nucleus | 91.63 | 93.0 |
| CDY02435 | Canola | nucleus | 91.63 | 93.0 |
| Bra030855.1-P | Field mustard | nucleus | 91.63 | 93.0 |
| Bra027434.1-P | Field mustard | nucleus | 91.13 | 92.5 |
| Os12t0580300-01 | Rice | nucleus | 92.61 | 90.38 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 96.06 | 89.45 |
| CDY56078 | Canola | nucleus | 53.2 | 83.72 |
| VIT_06s0004g00180.t01 | Wine grape | nucleus | 95.57 | 81.51 |
| TraesCS4B01G015700.2 | Wheat | nucleus | 84.73 | 76.79 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 95.07 | 67.96 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 91.13 | 58.18 |
| HORVU4Hr1G002400.5 | Barley | golgi | 93.6 | 56.38 |
| Zm00001d013856_P001 | Maize | nucleus | 40.89 | 53.21 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR012295 | UniProt:K4AV74 | HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 |
| ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | EnsemblPlantsGene:Solyc01g028930.2 | EnsemblPlants:Solyc01g028930.2.1 |
| InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI0002762F5C | : |
Description
No Description!
Coordinates
chr1:-:39925151..39936220
Molecular Weight (calculated)
22628.8 Da
IEP (calculated)
10.140
GRAVY (calculated)
-0.076
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQGLEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEQQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYAHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VITGAKVRDE TYTAFENIYP VLTEFRKNQQ
201: CVN
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYAHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VITGAKVRDE TYTAFENIYP VLTEFRKNQQ
201: CVN
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.