Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0645700-01 | Rice | cytosol, nucleus | 2.52 | 64.79 |
| VIT_12s0028g03940.t01 | Wine grape | nucleus | 63.47 | 60.48 |
| KRH39697 | Soybean | nucleus | 56.77 | 54.76 |
| KRH62676 | Soybean | nucleus | 56.72 | 54.74 |
| Os06t0645800-01 | Rice | nucleus | 24.9 | 51.59 |
| GSMUA_Achr2P11610_001 | Banana | nucleus | 51.78 | 51.5 |
| CDY44660 | Canola | nucleus | 50.96 | 50.41 |
| EER90111 | Sorghum | nucleus | 49.37 | 49.89 |
| TraesCS7A01G514800.1 | Wheat | nucleus | 48.6 | 49.33 |
| AT1G32750.1 | Thale cress | nucleus | 51.89 | 49.3 |
| TraesCS7D01G505200.1 | Wheat | nucleus | 48.55 | 49.28 |
| CDY18566 | Canola | nucleus | 46.3 | 49.21 |
| Zm00001d046579_P019 | Maize | nucleus | 48.77 | 49.2 |
| Bra035499.1-P | Field mustard | nucleus | 51.07 | 49.18 |
| TraesCS7B01G431500.1 | Wheat | nucleus | 48.38 | 49.11 |
| CDX95471 | Canola | nucleus | 46.02 | 48.95 |
| Bra037541.1-P | Field mustard | nucleus | 46.35 | 47.96 |
| HORVU7Hr1G115120.1 | Barley | plastid | 41.42 | 47.88 |
| TraesCS7D01G505400.1 | Wheat | nucleus | 46.02 | 47.62 |
| TraesCS7B01G431700.2 | Wheat | nucleus | 45.86 | 47.45 |
| TraesCS7A01G515000.1 | Wheat | plastid | 44.76 | 45.79 |
| AT3G19040.2 | Thale cress | nucleus | 44.98 | 45.76 |
| CDX84083 | Canola | nucleus | 5.92 | 45.38 |
| Os06t0645901-00 | Rice | cytosol, nucleus | 6.91 | 37.17 |
Protein Annotations
Description
No Description!
Coordinates
chr7:+:1668427..1692877
Molecular Weight (calculated)
206992.0 Da
IEP (calculated)
5.604
GRAVY (calculated)
-0.796
Length
1823 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFGNVDYSGD LDVDYLDEDA KEHLAALADK LGPSLTEIDL SVKSPQESAD AAEQDYDEKA EDAVDYEDID EQYEGPEVQT VTEEDLLLPK RDYFSTEISL
0101: TTLENRDSVF DDENYDEDDN EEKEQEVVEK AAEVQSTPVK GEYNNEAEVI SLGNKVPEEV ISMDAPEFSE DLQEEEPLAL EEPVDSQSSL PLPVLCVEDG
0201: EAILKFSEIF ALHKPRKKAE KRERRCSVPK DKYKAMHTLD IVEEDEVKLL RGSYEEFPWL RMTHVHHDSA LTMLDIEPGT VQGTDDLKPT IEKKDPCCSA
0301: EPMKENLSMD LCADWSSPIC PEFYPFDQQD WEDRIIWDNS PPLSDNTAES CEISEPDYEA LTDKQLDVEA ESQSLQSEKE IEPHEKGHSS FFSCSVSVEP
0401: FGSKQPSGHL DFSLSEGRYH PQLLRLESRL NSDKQKSTDT PKDGDTDEIL SSDALKRFTK LTLQNRDILE ESWVDNIIWE PDQPFPKPKL IYDLQDEQML
0501: FEVLHNRDDQ QLMLHAGAMI TTGLVKPSSG DSAELYGLSG LSGRFNIAND KYYLNRKSTQ QLKSHSKKRT AHGLKVLHSI PALKLQTMKA KLSNKDIANF
0601: HRPRALWHPH DNEVVLKEQR KLPTQGPMKI ILKSLGGKGS KLHVAAEETI SSLKSKASKK LDFKLSEPVK IIYCGKELED DKSLSAQNVP PNSVLHLVRT
0701: RIHLLPRAQK LPGENKSLRP PGAFKKKSDL SAKDGHVFLM EYCEERPLLL GNVGMGARLC TYYQKLSPND QQGTLMRNGN TGLGSVLTLD PSDKSPFLGD
0801: IKPGCSQSSL ETNMYRAPIF QQKVSSTDYL LVRSTKGKLS IRRIDRIDVV GQQEPHMEVT SPGSKGVQTY IMNRLLVYMY REFRAIEKRG SRPSIRADEL
0901: SAQFPSLSEA FLRKRLKHCA DLQRRSNGQF QWVMRFNFRI PSEEELRRLV SPESVCAYES MQAGLYRLKR LGITRLTHPT GLSAAMNQLP DEAIALAAAS
1001: HIERELQITP WNLSSNFVAC TNQDRENIER LEITGVGDPS GRGLGFSYVR TTPKAPIPNA ISKKKTVVAK GSTVTGTDAD LRRLSMEAAR EVLLKFNVPE
1101: EQIAKLTRWH RIAMIRKLSS EQAASGVKVD PTTISKYARG QRMSFLQLQQ QTREKCQEIW DRQVQNLSAV DGEENESDSE VNSDLDSFAG DLENLLDAED
1201: FEDGEEGSHE PKHDNADGVK GLKMRRRPFQ AQVEEEIEDE AAEAAELCRM LMDDDEADRK KKKKDKAMGE QIGFMPDIRY RFSTESTDRG KKPQIFAKPS
1301: IKSNGLNVLD FIGDQKELQA EGFATKRTPS SKVKPKKKFD ILDSGLFNKK VKILGEGIKP MKEKKSARDS FVCGACGQLG HMRTNKNCPK YGEDVEARAE
1401: STDLEKTTGK SMGSIDILDQ SQIFSKKIQK SGTKNLMVDV HEDDNSSSKA KVLKVKCAST DKLPDKPTPA TSLNSDIPVT SDAEIGTLPP PIKFNKIKFS
1501: NKMRAEDDSN EAYKPSILVR PPMETAESHR SKKIVIKQLK DSTSVDEGFL DGSSGMEYRK TKKINELSYM GQQEREYLYE ETLGRKKMDD KRLWEEEERR
1601: RIAVRQREER AKIYERQKAL EEQEKLAAIE SYQDAIRRER EEEERLKEKK KKKKKTEIRD DYLDDFLPRR NDRRIPDRDR SVKRRQTFES GRHAKEHAPP
1701: TKRRRGGEVG LSNILEEIVD TLKNNVNVSY LFLKPVTRKE APDYHKYVKR PMDLSTIKEK ARKLEYKNRG QFRHDVAQIT INAHLYNDGR NPGIPPLADQ
1801: LLEICDYLLE ENESILAEAE SAI
0101: TTLENRDSVF DDENYDEDDN EEKEQEVVEK AAEVQSTPVK GEYNNEAEVI SLGNKVPEEV ISMDAPEFSE DLQEEEPLAL EEPVDSQSSL PLPVLCVEDG
0201: EAILKFSEIF ALHKPRKKAE KRERRCSVPK DKYKAMHTLD IVEEDEVKLL RGSYEEFPWL RMTHVHHDSA LTMLDIEPGT VQGTDDLKPT IEKKDPCCSA
0301: EPMKENLSMD LCADWSSPIC PEFYPFDQQD WEDRIIWDNS PPLSDNTAES CEISEPDYEA LTDKQLDVEA ESQSLQSEKE IEPHEKGHSS FFSCSVSVEP
0401: FGSKQPSGHL DFSLSEGRYH PQLLRLESRL NSDKQKSTDT PKDGDTDEIL SSDALKRFTK LTLQNRDILE ESWVDNIIWE PDQPFPKPKL IYDLQDEQML
0501: FEVLHNRDDQ QLMLHAGAMI TTGLVKPSSG DSAELYGLSG LSGRFNIAND KYYLNRKSTQ QLKSHSKKRT AHGLKVLHSI PALKLQTMKA KLSNKDIANF
0601: HRPRALWHPH DNEVVLKEQR KLPTQGPMKI ILKSLGGKGS KLHVAAEETI SSLKSKASKK LDFKLSEPVK IIYCGKELED DKSLSAQNVP PNSVLHLVRT
0701: RIHLLPRAQK LPGENKSLRP PGAFKKKSDL SAKDGHVFLM EYCEERPLLL GNVGMGARLC TYYQKLSPND QQGTLMRNGN TGLGSVLTLD PSDKSPFLGD
0801: IKPGCSQSSL ETNMYRAPIF QQKVSSTDYL LVRSTKGKLS IRRIDRIDVV GQQEPHMEVT SPGSKGVQTY IMNRLLVYMY REFRAIEKRG SRPSIRADEL
0901: SAQFPSLSEA FLRKRLKHCA DLQRRSNGQF QWVMRFNFRI PSEEELRRLV SPESVCAYES MQAGLYRLKR LGITRLTHPT GLSAAMNQLP DEAIALAAAS
1001: HIERELQITP WNLSSNFVAC TNQDRENIER LEITGVGDPS GRGLGFSYVR TTPKAPIPNA ISKKKTVVAK GSTVTGTDAD LRRLSMEAAR EVLLKFNVPE
1101: EQIAKLTRWH RIAMIRKLSS EQAASGVKVD PTTISKYARG QRMSFLQLQQ QTREKCQEIW DRQVQNLSAV DGEENESDSE VNSDLDSFAG DLENLLDAED
1201: FEDGEEGSHE PKHDNADGVK GLKMRRRPFQ AQVEEEIEDE AAEAAELCRM LMDDDEADRK KKKKDKAMGE QIGFMPDIRY RFSTESTDRG KKPQIFAKPS
1301: IKSNGLNVLD FIGDQKELQA EGFATKRTPS SKVKPKKKFD ILDSGLFNKK VKILGEGIKP MKEKKSARDS FVCGACGQLG HMRTNKNCPK YGEDVEARAE
1401: STDLEKTTGK SMGSIDILDQ SQIFSKKIQK SGTKNLMVDV HEDDNSSSKA KVLKVKCAST DKLPDKPTPA TSLNSDIPVT SDAEIGTLPP PIKFNKIKFS
1501: NKMRAEDDSN EAYKPSILVR PPMETAESHR SKKIVIKQLK DSTSVDEGFL DGSSGMEYRK TKKINELSYM GQQEREYLYE ETLGRKKMDD KRLWEEEERR
1601: RIAVRQREER AKIYERQKAL EEQEKLAAIE SYQDAIRRER EEEERLKEKK KKKKKTEIRD DYLDDFLPRR NDRRIPDRDR SVKRRQTFES GRHAKEHAPP
1701: TKRRRGGEVG LSNILEEIVD TLKNNVNVSY LFLKPVTRKE APDYHKYVKR PMDLSTIKEK ARKLEYKNRG QFRHDVAQIT INAHLYNDGR NPGIPPLADQ
1801: LLEICDYLLE ENESILAEAE SAI
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.