Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0645700-01 | Rice | cytosol, nucleus | 2.45 | 63.38 |
| Os06t0645800-01 | Rice | nucleus | 29.24 | 60.91 |
| TraesCS7A01G514800.1 | Wheat | nucleus | 55.05 | 56.18 |
| TraesCS7D01G505200.1 | Wheat | nucleus | 54.99 | 56.12 |
| EER90111 | Sorghum | nucleus | 55.05 | 55.93 |
| TraesCS7B01G431500.1 | Wheat | nucleus | 54.77 | 55.9 |
| Zm00001d046579_P019 | Maize | nucleus | 55.05 | 55.84 |
| HORVU7Hr1G115120.1 | Barley | plastid | 47.14 | 54.79 |
| VIT_12s0028g03940.t01 | Wine grape | nucleus | 56.3 | 53.95 |
| TraesCS7D01G505400.1 | Wheat | nucleus | 51.66 | 53.75 |
| TraesCS7B01G431700.2 | Wheat | nucleus | 51.34 | 53.41 |
| TraesCS7A01G515000.1 | Wheat | plastid | 50.52 | 51.96 |
| Solyc07g006820.2.1 | Tomato | nucleus | 51.5 | 51.78 |
| KRH62676 | Soybean | nucleus | 52.21 | 50.66 |
| KRH39697 | Soybean | nucleus | 51.72 | 50.16 |
| CDX84083 | Canola | nucleus | 6.06 | 46.64 |
| CDY44660 | Canola | nucleus | 46.43 | 46.17 |
| CDY18566 | Canola | nucleus | 42.77 | 45.71 |
| Bra035499.1-P | Field mustard | nucleus | 47.03 | 45.54 |
| CDX95471 | Canola | nucleus | 42.44 | 45.39 |
| AT1G32750.1 | Thale cress | nucleus | 47.08 | 44.97 |
| Os06t0645901-00 | Rice | cytosol, nucleus | 8.29 | 44.84 |
| Bra037541.1-P | Field mustard | nucleus | 42.44 | 44.15 |
| AT3G19040.2 | Thale cress | nucleus | 40.53 | 41.46 |
Protein Annotations
| Gene3D:1.20.920.10 | MapMan:15.3.4.4.4 | MapMan:15.3.5.3.2 | MapMan:18.4.7.3 | Gene3D:3.10.20.90 | InterPro:Bromodomain |
| InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSMUA_Achr2G11610_001 | EnsemblPlants:GSMUA_Achr2P11610_001 | EnsemblPlants:GSMUA_Achr2T11610_001 | InterPro:IPR000626 | InterPro:IPR001487 | InterPro:IPR036427 |
| UniProt:M0S752 | PFAM:PF00240 | PFAM:PF00439 | PFAM:PF09247 | PFAM:PF12157 | PFAM:PF15288 |
| PRINTS:PR00503 | ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS50053 | SMART:SM00213 | SMART:SM00297 |
| SUPFAM:SSF47370 | SUPFAM:SSF54236 | InterPro:TAF_II_230-bd | InterPro:TFIID_sub1_DUF3591 | UniParc:UPI000295F38D | InterPro:Ubiquitin-like_domsf |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
Transcription initiation factor TFIID subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G11610_001]
Coordinates
chr2:-:14382621..14410709
Molecular Weight (calculated)
207052.0 Da
IEP (calculated)
6.012
GRAVY (calculated)
-0.713
Length
1833 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFGNVDNSGD LDVDYLDEDA KEHLSALADK LGPSLTDIDL IKSSPAPSDA SSEQDYDEKA EDAINYEDID EQYDGPEVEA TTEEDHLLPK KEYFSSSSLL
0101: VSLDHKASVF DEENYDEDEE TVKEHEEVED KTETQIIASS VKEVPSDDNL ASAVSSDEDV DIFELGDLEV IHLCLAIESH GDTSLPVLCI EDGMVILRFS
0201: EIFGRHEPAR KPERKVHQKR PIVKFLLDIA TGNFFSCNRK TLISFTLCEP ETLDVADIVE EDEEAFLRSS SQNLSNAKNS GSTHVDFDDF VEEPVSGVDE
0301: KHKDLFLSAQ PMKDDIDLNM FLRKSSVCPD LYPFDQLDWE NDIVWGNSPE ASHGCSESCV ATEHDVEANN DAKSEEFLQR DAEVAEQDVN MPKDFILVES
0401: FGSRNFSISR YNQSYEANYP SRSDVSELVS RRDILCSPEA MTQNRFEEVC KSGALGRLNK LSLLNKELLE GSWLDNVIWD SDEDIPKPKL ILDLQDDQML
0501: FEILDNNARD HLRSHAGAMM INRSSQSFLE DSFDLHSQGM ASAGQFNISN DKYYSNRKTS QQTKSHAKKR TLLSLKVMHS VPALKLQTMK PKLSYKEIAN
0601: FHRPKSLWYP HNNAIAAKAQ GPPCFHGSMK VVLISLGGKA IKLHVNAEET LSAVKLRASK KLDLKPSEKF KVFYSGRELE DHMTVAAQDV RPNSVLHLVR
0701: TRIYLWPKAQ KLPGENRPLR PPGAFKKKSE LSVKDGHVFL LEYCEERPLL LGNVGMGARL CTYYQKTAPG DQTASSLRNG NNRLGTVLTL DPADKSPFLG
0801: DIGSGCSQTC LETNMYRAPV FPHKLSSTDF LLVRSAKGML SLRRIDKLYV VGQQEPHMEV LSPGAKTVQN YLVNRMLVYV YREFRATEKP GILPHIRADE
0901: LFAQFPGLTD AFVRKRLKHC ADIKKGSNGQ LLWVRKVDFR IPSEEELRRI LSPENVCSYE SMQSGLYRLK QLGISRLTHP VGLSAAMNQL PDEAIALAGA
1001: SHIERELQIT SWNLTSNFVA CTNQDRENIE RLEITGVGDP TGRGLGFSYV RVTSKPPISS AISKKKAAAA RGSSTVTGTD ADLRRLSMDA AREVLLKFNV
1101: PEEQIDKLTR WHRIAMVRKL SSEQAAAGVK VDATTLNKFA RGQRMSFLQL QQQTREKCQE IWDRQVQSLS AADGDENDSD SEAISDLDSF AGDLENLLDA
1201: EEFDEEDDGN TDMRGEKADG VKGLKMRRCP SQTQTEEEIE DDKAEAAMIH RLLEDDGAEI KKKKKKPAGM EAIGSHLGPE NTDFTKKTST GVGQTIIASH
1301: ADGSYISKDI MLRETKEVEK LHPEMNLPGK IKPKKANGVS EDISTGLLKR KSVAPKEGIK VFKEKKQSDK PVRESFVCGA CGQLGHMRTN KNCPKYREEP
1401: ETSELESATA KPSHPDVAGQ FQVKTPSKKS ISNALAKVSE VEASENVEKA GLKMQGKIIP VKFKCGPADK PSEKTLSGAH SFNKHITDAD IESKSTGKIN
1501: KIIISNKKKT EDVQQEKPKH AVVIRPPVDT EKDQPKKKII IKQPKVNTNI EPPRQPSRQF YDAEMDYDFR KTKKIAELSS YEEQKKPENK LFAGEAIKRY
1601: QGHGRRSVEE EEKRRSREKA RRMLEDERRM QEETQRLSES RRYEEAIRKE ELRKAKKKKK TVKPDFRDEY LSEHRPYRND RRIPERDRAA KRRAMVEPGQ
1701: LDYAPVAKRR RGGEVEFSNI LGSIVESLRD NYEVSYLFLK PVTKKEAPDY LDIIEQPMDL STIRDKVRNM EYRTREDFRH DIWQITFNAH KYNDGRNPGI
1801: PPLADQLLEL CDYYLQQRHE ELSDAEAGID TRT
0101: VSLDHKASVF DEENYDEDEE TVKEHEEVED KTETQIIASS VKEVPSDDNL ASAVSSDEDV DIFELGDLEV IHLCLAIESH GDTSLPVLCI EDGMVILRFS
0201: EIFGRHEPAR KPERKVHQKR PIVKFLLDIA TGNFFSCNRK TLISFTLCEP ETLDVADIVE EDEEAFLRSS SQNLSNAKNS GSTHVDFDDF VEEPVSGVDE
0301: KHKDLFLSAQ PMKDDIDLNM FLRKSSVCPD LYPFDQLDWE NDIVWGNSPE ASHGCSESCV ATEHDVEANN DAKSEEFLQR DAEVAEQDVN MPKDFILVES
0401: FGSRNFSISR YNQSYEANYP SRSDVSELVS RRDILCSPEA MTQNRFEEVC KSGALGRLNK LSLLNKELLE GSWLDNVIWD SDEDIPKPKL ILDLQDDQML
0501: FEILDNNARD HLRSHAGAMM INRSSQSFLE DSFDLHSQGM ASAGQFNISN DKYYSNRKTS QQTKSHAKKR TLLSLKVMHS VPALKLQTMK PKLSYKEIAN
0601: FHRPKSLWYP HNNAIAAKAQ GPPCFHGSMK VVLISLGGKA IKLHVNAEET LSAVKLRASK KLDLKPSEKF KVFYSGRELE DHMTVAAQDV RPNSVLHLVR
0701: TRIYLWPKAQ KLPGENRPLR PPGAFKKKSE LSVKDGHVFL LEYCEERPLL LGNVGMGARL CTYYQKTAPG DQTASSLRNG NNRLGTVLTL DPADKSPFLG
0801: DIGSGCSQTC LETNMYRAPV FPHKLSSTDF LLVRSAKGML SLRRIDKLYV VGQQEPHMEV LSPGAKTVQN YLVNRMLVYV YREFRATEKP GILPHIRADE
0901: LFAQFPGLTD AFVRKRLKHC ADIKKGSNGQ LLWVRKVDFR IPSEEELRRI LSPENVCSYE SMQSGLYRLK QLGISRLTHP VGLSAAMNQL PDEAIALAGA
1001: SHIERELQIT SWNLTSNFVA CTNQDRENIE RLEITGVGDP TGRGLGFSYV RVTSKPPISS AISKKKAAAA RGSSTVTGTD ADLRRLSMDA AREVLLKFNV
1101: PEEQIDKLTR WHRIAMVRKL SSEQAAAGVK VDATTLNKFA RGQRMSFLQL QQQTREKCQE IWDRQVQSLS AADGDENDSD SEAISDLDSF AGDLENLLDA
1201: EEFDEEDDGN TDMRGEKADG VKGLKMRRCP SQTQTEEEIE DDKAEAAMIH RLLEDDGAEI KKKKKKPAGM EAIGSHLGPE NTDFTKKTST GVGQTIIASH
1301: ADGSYISKDI MLRETKEVEK LHPEMNLPGK IKPKKANGVS EDISTGLLKR KSVAPKEGIK VFKEKKQSDK PVRESFVCGA CGQLGHMRTN KNCPKYREEP
1401: ETSELESATA KPSHPDVAGQ FQVKTPSKKS ISNALAKVSE VEASENVEKA GLKMQGKIIP VKFKCGPADK PSEKTLSGAH SFNKHITDAD IESKSTGKIN
1501: KIIISNKKKT EDVQQEKPKH AVVIRPPVDT EKDQPKKKII IKQPKVNTNI EPPRQPSRQF YDAEMDYDFR KTKKIAELSS YEEQKKPENK LFAGEAIKRY
1601: QGHGRRSVEE EEKRRSREKA RRMLEDERRM QEETQRLSES RRYEEAIRKE ELRKAKKKKK TVKPDFRDEY LSEHRPYRND RRIPERDRAA KRRAMVEPGQ
1701: LDYAPVAKRR RGGEVEFSNI LGSIVESLRD NYEVSYLFLK PVTKKEAPDY LDIIEQPMDL STIRDKVRNM EYRTREDFRH DIWQITFNAH KYNDGRNPGI
1801: PPLADQLLEL CDYYLQQRHE ELSDAEAGID TRT
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.