Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P11610_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | GSMUA_Achr2P11610_001 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 15.16 | 37.11 |
| Zm00001d025266_P001 | Maize | cytosol | 21.89 | 32.4 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 66.11 | 23.11 |
| Zm00001d005736_P003 | Maize | cytosol | 17.47 | 22.62 |
| KRH03813 | Soybean | nucleus | 63.58 | 21.76 |
| KRH56695 | Soybean | nucleus | 63.16 | 21.61 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 62.53 | 21.11 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 62.32 | 20.98 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 62.32 | 20.96 |
| TraesCS5D01G213200.1 | Wheat | nucleus | 62.11 | 20.89 |
| Solyc03g119780.2.1 | Tomato | nucleus | 62.74 | 19.75 |
| KXG35610 | Sorghum | nucleus | 53.47 | 18.29 |
| CDX73029 | Canola | nucleus | 50.95 | 17.56 |
| AT1G73960.1 | Thale cress | cytosol | 51.37 | 17.55 |
| CDX96499 | Canola | nucleus | 50.32 | 17.36 |
| Bra015951.1-P | Field mustard | nucleus | 50.32 | 17.18 |
| Zm00001d020432_P001 | Maize | nucleus | 36.63 | 14.61 |
| Os09t0410125-00 | Rice | extracellular | 5.89 | 8.7 |
| Os09t0410300-01 | Rice | nucleus | 1.68 | 3.57 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 0.84 | 3.05 |
| PGSC0003DMT400014328 | Potato | nucleus | 3.58 | 2.95 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 0.63 | 1.3 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 2.53 | 1.26 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.390.60 | MapMan:15.3.5.3.3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008237 | GO:GO:0008270 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr3G07300_001 | EnsemblPlants:GSMUA_Achr3P07300_001 | EnsemblPlants:GSMUA_Achr3T07300_001 | UniProt:M0SCJ7 | PFAM:PF01433 | PANTHER:PTHR15137 |
| InterPro:Peptidase_M1_N | SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 | UniParc:UPI000294A422 | SEG:seg |
Description
Putative Transcription initiation factor TFIID subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G07300_001]
Coordinates
chr3:-:4979896..4996600
Molecular Weight (calculated)
53151.2 Da
IEP (calculated)
5.898
GRAVY (calculated)
-0.048
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKPRKQKNE EQKPECSGAV VVHQKLCVSI DMVKRRIYGY TELKMTIPEG GHVALHADNM TITNISVDGE PADFEYFPHY QVVEEARFCS VSCSSSAANV
101: ACSMYTSSLD KEMVPNLLIA CNGSVKLDLP QEKENGGNSV QDSCSQQNEK LVRIDYWVDR AETGIHFVDN VLLTDNQIRR AHCWFPCLDS ISQRCPFDLE
201: FTVDVNLVAV SNGDLHYQVL SKDDPPRKTF VYKLTTPVSA GWISLIVAPF EILSDSHINI ISHICLPPSF SKLQNTVGFF HNAFSYYEDY LSTSFPFGSY
301: KQIFIPPELT ISSLSLGASL CIFGSHILFD DRVIDQTIDT RIKLAYALAR QWFGVFITAH EPTDEWLLDG LAGFLTDTYI KHSLGNNEAR YRRYKANFAV
401: CKADVSGATA LSSSAASSDL YGTQWIGLYG KIRSWKAISV LQMLEKQIGP DSFCKVCSCA SLSSIYFFLA FYDCC
101: ACSMYTSSLD KEMVPNLLIA CNGSVKLDLP QEKENGGNSV QDSCSQQNEK LVRIDYWVDR AETGIHFVDN VLLTDNQIRR AHCWFPCLDS ISQRCPFDLE
201: FTVDVNLVAV SNGDLHYQVL SKDDPPRKTF VYKLTTPVSA GWISLIVAPF EILSDSHINI ISHICLPPSF SKLQNTVGFF HNAFSYYEDY LSTSFPFGSY
301: KQIFIPPELT ISSLSLGASL CIFGSHILFD DRVIDQTIDT RIKLAYALAR QWFGVFITAH EPTDEWLLDG LAGFLTDTYI KHSLGNNEAR YRRYKANFAV
401: CKADVSGATA LSSSAASSDL YGTQWIGLYG KIRSWKAISV LQMLEKQIGP DSFCKVCSCA SLSSIYFFLA FYDCC
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.