Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | KRH39697 | AT1G32750.1 | 17340043 |
| AT1G73960.1 | KRH62676 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56695 | Soybean | nucleus | 89.27 | 89.27 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 69.16 | 70.64 |
| Os09t0410125-00 | Rice | extracellular | 15.49 | 66.77 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 21.76 | 63.58 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 5.91 | 62.6 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 10.01 | 60.17 |
| Solyc03g119780.2.1 | Tomato | nucleus | 61.6 | 56.66 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 6.12 | 55.56 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 36.89 | 53.89 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 51.95 | 51.24 |
| TraesCS5D01G213200.1 | Wheat | nucleus | 52.02 | 51.13 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 51.95 | 51.06 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 51.59 | 50.74 |
| AT1G73960.1 | Thale cress | cytosol | 46.76 | 46.69 |
| CDX96499 | Canola | nucleus | 45.82 | 46.19 |
| CDX73029 | Canola | nucleus | 45.82 | 46.15 |
| Bra015951.1-P | Field mustard | nucleus | 45.82 | 45.72 |
| KXG35610 | Sorghum | nucleus | 41.07 | 41.04 |
| Zm00001d020432_P001 | Maize | nucleus | 32.49 | 37.87 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 4.97 | 35.57 |
| Os09t0410300-01 | Rice | nucleus | 5.4 | 33.48 |
| Zm00001d005736_P003 | Maize | cytosol | 8.65 | 32.7 |
| Zm00001d025266_P001 | Maize | cytosol | 7.06 | 30.53 |
| PGSC0003DMT400014328 | Potato | nucleus | 12.46 | 30.03 |
Protein Annotations
| Gene3D:1.10.390.60 | EntrezGene:100792795 | MapMan:15.3.5.3.3 | EMBL:ACUP02010363 | InterPro:ARM-type_fold | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_17G121600 | GO:GO:0001075 | GO:GO:0001129 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003682 | GO:GO:0003700 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008237 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045944 |
| GO:GO:0051123 | UniProt:I1MUG4 | EnsemblPlants:KRH03813 | ProteinID:KRH03813 | ProteinID:KRH03813.1 | PFAM:PF01433 |
| PANTHER:PTHR15137 | InterPro:Peptidase_M1_N | SUPFAM:SSF48371 | SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 |
| UniParc:UPI000233E4F3 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:-:9715404..9730191
Molecular Weight (calculated)
156600.0 Da
IEP (calculated)
6.629
GRAVY (calculated)
-0.454
Length
1388 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKPRKPKNN EDPKPENSGA VVHHQKLCLS IDIDKRQVHG YTELEIAVPE IGIVGLHAEN LGIESVCVDG EPTEFEYYPH HQQQGEDEKR FSSVCSPSSA
0101: ADAAVSVYMS ALEKELVPNL LINCCKPSKA ESEQQQEQQP TSENGFHSSA EPKQNVRTVR IDYWIEKAET GIHFRNNLLH TDNQIRRARC WFPCIDDNSQ
0201: RCCYDLEFTV AYNLVAVSTG SLLYQVLSKD NPPQKTYVYK LDVPVAARWI SLAVAPFEIL PDHQFSLISH MCSLPNLSKM RNTVDFFHSA FSCYKDYLSV
0301: DFPFDSYTQV FIEPEMAVSS LSLGASMSVF SSQVLFDEKV IDQTIDTRVK LAYALARQWF GVYITPEAPN DEWLLDGLAG FLTDFFIKKH LGNNEARYRR
0401: YKANCAVCKV DNGGATALSC SASCKDLYGT QCIGLYGKIR SWKSVAALQM LEKQMGPESF RRILQTIVSR AQDKTRSIKT LSTKEFRHFA NKVGNLERPF
0501: LKDFFPRWVG SCGCPVLRMG FSYNKRKNMV ELAVLRGCTA LQTSNTSILD INPDTETRDG DTGWPGMMSI RVYELDGMYD HPILPMAGDA WQLLEIQCHS
0601: KLAARRFQKP KKGLKLDGSD DNGDVPSMDM RSNTESPLLW IRADPDMEYL AEVHFNQPVQ MWINQLEKDK DVIAQAQAIA ALEASPQLSF SIVNALNNFL
0701: SDSKAFWRVR IEAAFALANS ASEETDFSGL LHLMKFYKSR RFDTDIGLPK PNDFHDFAEY FVLEAIPHAV AMVRAADKKS PREAIEFVLQ LLKYNDNNGN
0801: PYSDVFWLAA LVQSVGELEF GQQSILLLSS LLKRIDRLLQ FDSLMPSYNG ILTISCIRTL TQIALKLSGF IPLDRVYGLV KPFRDIKALW QVRIEASRAL
0901: LDLEFHCKGM DSALLLFIKY IEEEHSLRGQ LKLATHVMRL CQMRDGLNSN DEITSQTLVS MLNLLEGRIA FNNAFLRHYL FCILQILARR HPTLHGIPRE
1001: NRMLHMSLTE ASNYQKNMLA LDSESKPLDL PSSIDDLTQN LGPTMEGLRD ALDEAPKDQP CEAPTQVHLE ALKEASLEKP KEVFTEFPQE APIEAPNEIS
1101: KEADTVSNSH ERKRPIKIKV KQSSATSRAD TDNQVVERSL GGRNEMDHGA SSSVSVDAPQ RNFAETVSIS NHNIDEVNSW HDRGSRMTAS IGSAKFLSDG
1201: DELVKELQCT ADSSIVYSQP QPEDPSSSSI IQDNNIDADA RRYASLQTLS VARFDPDGEP LGKEISARGK EKHKSKEKKR KRESNKGHHD DPEYLERKRL
1301: KKEKKRREKE LAKLQSDEAK RSSIDMSSKK EEPVVDVVAR QVTSVEPTGY DSKLEIKKID TTKPEPSEGT SGAPKIRIKI KNRMLSKP
0101: ADAAVSVYMS ALEKELVPNL LINCCKPSKA ESEQQQEQQP TSENGFHSSA EPKQNVRTVR IDYWIEKAET GIHFRNNLLH TDNQIRRARC WFPCIDDNSQ
0201: RCCYDLEFTV AYNLVAVSTG SLLYQVLSKD NPPQKTYVYK LDVPVAARWI SLAVAPFEIL PDHQFSLISH MCSLPNLSKM RNTVDFFHSA FSCYKDYLSV
0301: DFPFDSYTQV FIEPEMAVSS LSLGASMSVF SSQVLFDEKV IDQTIDTRVK LAYALARQWF GVYITPEAPN DEWLLDGLAG FLTDFFIKKH LGNNEARYRR
0401: YKANCAVCKV DNGGATALSC SASCKDLYGT QCIGLYGKIR SWKSVAALQM LEKQMGPESF RRILQTIVSR AQDKTRSIKT LSTKEFRHFA NKVGNLERPF
0501: LKDFFPRWVG SCGCPVLRMG FSYNKRKNMV ELAVLRGCTA LQTSNTSILD INPDTETRDG DTGWPGMMSI RVYELDGMYD HPILPMAGDA WQLLEIQCHS
0601: KLAARRFQKP KKGLKLDGSD DNGDVPSMDM RSNTESPLLW IRADPDMEYL AEVHFNQPVQ MWINQLEKDK DVIAQAQAIA ALEASPQLSF SIVNALNNFL
0701: SDSKAFWRVR IEAAFALANS ASEETDFSGL LHLMKFYKSR RFDTDIGLPK PNDFHDFAEY FVLEAIPHAV AMVRAADKKS PREAIEFVLQ LLKYNDNNGN
0801: PYSDVFWLAA LVQSVGELEF GQQSILLLSS LLKRIDRLLQ FDSLMPSYNG ILTISCIRTL TQIALKLSGF IPLDRVYGLV KPFRDIKALW QVRIEASRAL
0901: LDLEFHCKGM DSALLLFIKY IEEEHSLRGQ LKLATHVMRL CQMRDGLNSN DEITSQTLVS MLNLLEGRIA FNNAFLRHYL FCILQILARR HPTLHGIPRE
1001: NRMLHMSLTE ASNYQKNMLA LDSESKPLDL PSSIDDLTQN LGPTMEGLRD ALDEAPKDQP CEAPTQVHLE ALKEASLEKP KEVFTEFPQE APIEAPNEIS
1101: KEADTVSNSH ERKRPIKIKV KQSSATSRAD TDNQVVERSL GGRNEMDHGA SSSVSVDAPQ RNFAETVSIS NHNIDEVNSW HDRGSRMTAS IGSAKFLSDG
1201: DELVKELQCT ADSSIVYSQP QPEDPSSSSI IQDNNIDADA RRYASLQTLS VARFDPDGEP LGKEISARGK EKHKSKEKKR KRESNKGHHD DPEYLERKRL
1301: KKEKKRREKE LAKLQSDEAK RSSIDMSSKK EEPVVDVVAR QVTSVEPTGY DSKLEIKKID TTKPEPSEGT SGAPKIRIKI KNRMLSKP
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.