Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G213200.1 | Wheat | nucleus | 97.8 | 97.8 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 97.24 | 97.58 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 95.61 | 95.68 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 14.16 | 86.58 |
| Os09t0410125-00 | Rice | extracellular | 18.84 | 82.61 |
| KXG35610 | Sorghum | nucleus | 63.81 | 64.87 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 20.96 | 62.32 |
| Zm00001d020432_P001 | Maize | nucleus | 51.91 | 61.54 |
| Os09t0410300-01 | Rice | nucleus | 8.78 | 55.36 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 7.51 | 54.64 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 51.98 | 54.01 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 35.91 | 53.37 |
| KRH03813 | Soybean | nucleus | 51.06 | 51.95 |
| KRH56695 | Soybean | nucleus | 50.99 | 51.87 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 4.6 | 49.62 |
| Solyc03g119780.2.1 | Tomato | nucleus | 49.58 | 46.39 |
| CDX73029 | Canola | nucleus | 37.68 | 38.61 |
| CDX96499 | Canola | nucleus | 37.54 | 38.49 |
| AT1G73960.1 | Thale cress | cytosol | 37.68 | 38.27 |
| Bra015951.1-P | Field mustard | nucleus | 37.54 | 38.1 |
| PGSC0003DMT400014328 | Potato | nucleus | 9.07 | 22.22 |
Protein Annotations
| Gene3D:1.10.390.60 | MapMan:15.3.5.3.3 | Gene3D:2.60.40.1730 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0008237 | GO:GO:0008270 | GO:GO:0016787 | PFAM:PF01433 |
| PANTHER:PTHR15137 | InterPro:Peptidase_M1_N | SUPFAM:SSF48371 | SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 |
| EnsemblPlantsGene:TraesCS5B01G205400 | EnsemblPlants:TraesCS5B01G205400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:+:373666372..373683050
Molecular Weight (calculated)
157581.0 Da
IEP (calculated)
6.277
GRAVY (calculated)
-0.508
Length
1412 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKARKQKPE GGAGGGPTVL HQKLCLSIDM ENQLIYGYTE MKVLLAENDS FALHADSMTI RNILVDGEAA EFEYSPHWRS VDDQSSWLSV SCLKTAADAA
0101: CSAYVSSLTS EAVPNLIISS ERSVKSTTEL PGNENCEKHE GIGGKHVQFS DDKAVKICNG STEENGKEEE KENKTEDGKD NDKEEKTEME VETEKEKETE
0201: EEKEKEKEKE KEEKDEEKEK DVINENEKEK ENEMQIENEK VKNTKLVRVD YILEKAETGV HFVNSVLHSN SQIRRAHCWF PCIDSATQRC PFDLEFTVST
0301: DLVAVSNGDL LYQVLSKEDP PRKTYVYKLS TPVSAQWISL VVGPFEVLPD KNGISVSHMC LSPALSKLDN TISFFHDAYS CYEDYLAASF PFGLYKQIFL
0401: PSEMVVSPTS FGASTCIFSA DILNDEKVID QIIGTRIKLA YALARQWFGI YTSAEEPNDE WLLDGLAGFL TDLFIKRYLG NNEARYRRFK ANCTVCQFDV
0501: SGATALGSPD ASTDLYGTQT LGSYGKIRSL KAVAVLQTLE KQMGPDSFRK ILQMIVASTR ASRTLSTKEF RHLANKIGNL ERPFLKEFFP RWIESCGCPI
0601: MRLGISYNKR RNLVELAVSR GCTAKADPVS DSHVNGDIQE GATGWPGMMS VRVHETDGVY DHPILPMAGE ALQVMELQCH SKLAAKRFQK TKKGSKPDGS
0701: DDNVDASTQE NRTSMDSPLL WIRVDPEMEY LAEIHFHQPI QMWINQLEKD KDVISQSQAI AVLEKLPQLS FAVINALNNF LNDTKAFWRV RVEAAYALAV
0801: TASEDTDLAG LLHLVKFYKS RRFDTDIGLP RPNDFHDIPE YFVLEAIPHA VALVRSSDKS SPRQAIEFIL QLLKYNDNNG NVYSDVYWLA AMVQAIGEVE
0901: FGQQGIGLLS SLLKRIDRLL QFDNFMPGYN GVLTVSCIRA LARIAERVSS SICLDRICEL IAPFRSMDKP WKVQIEASRV LLDLELHHKG LDAALLLFLK
1001: YTDEERSLRG ATKLAVHVLR ICQANIESNV TDQIKLPTLF GLLHLLSSKK AYNNVLLRHN VFCILQIAAG RSPTLYGVPK FVAPSPLVQE VSVDQHTKAD
1101: SSVPQLSRPQ EPSTSTPSVR EVLPATGPSK DADNISNCSE RRNVVKIRVR RSASSSKADG ADHQDHSHGG RNENEAGPCS SMSVDAPMVG APNEPPTTSN
1201: HNIEEQNSCH DRESRMSASV SNAKVMDTYE ISKELQCTAD SRIYAADSRL DAVPKDEFSP VLNVREDVDK PGSQLEGVST SYVGTQAPES VNGLHSKEKK
1301: RKDKKDKKRN RDEKRDKKDD PEYLAKKRLK KEKKKMEKEL ARKQKEGDRA TSQQDIVVKP SDSQGTVAAT PPAPEQSAEP QVSSKDAAVD TARTPPPTKK
1401: IKIKFKPLKK IG
0101: CSAYVSSLTS EAVPNLIISS ERSVKSTTEL PGNENCEKHE GIGGKHVQFS DDKAVKICNG STEENGKEEE KENKTEDGKD NDKEEKTEME VETEKEKETE
0201: EEKEKEKEKE KEEKDEEKEK DVINENEKEK ENEMQIENEK VKNTKLVRVD YILEKAETGV HFVNSVLHSN SQIRRAHCWF PCIDSATQRC PFDLEFTVST
0301: DLVAVSNGDL LYQVLSKEDP PRKTYVYKLS TPVSAQWISL VVGPFEVLPD KNGISVSHMC LSPALSKLDN TISFFHDAYS CYEDYLAASF PFGLYKQIFL
0401: PSEMVVSPTS FGASTCIFSA DILNDEKVID QIIGTRIKLA YALARQWFGI YTSAEEPNDE WLLDGLAGFL TDLFIKRYLG NNEARYRRFK ANCTVCQFDV
0501: SGATALGSPD ASTDLYGTQT LGSYGKIRSL KAVAVLQTLE KQMGPDSFRK ILQMIVASTR ASRTLSTKEF RHLANKIGNL ERPFLKEFFP RWIESCGCPI
0601: MRLGISYNKR RNLVELAVSR GCTAKADPVS DSHVNGDIQE GATGWPGMMS VRVHETDGVY DHPILPMAGE ALQVMELQCH SKLAAKRFQK TKKGSKPDGS
0701: DDNVDASTQE NRTSMDSPLL WIRVDPEMEY LAEIHFHQPI QMWINQLEKD KDVISQSQAI AVLEKLPQLS FAVINALNNF LNDTKAFWRV RVEAAYALAV
0801: TASEDTDLAG LLHLVKFYKS RRFDTDIGLP RPNDFHDIPE YFVLEAIPHA VALVRSSDKS SPRQAIEFIL QLLKYNDNNG NVYSDVYWLA AMVQAIGEVE
0901: FGQQGIGLLS SLLKRIDRLL QFDNFMPGYN GVLTVSCIRA LARIAERVSS SICLDRICEL IAPFRSMDKP WKVQIEASRV LLDLELHHKG LDAALLLFLK
1001: YTDEERSLRG ATKLAVHVLR ICQANIESNV TDQIKLPTLF GLLHLLSSKK AYNNVLLRHN VFCILQIAAG RSPTLYGVPK FVAPSPLVQE VSVDQHTKAD
1101: SSVPQLSRPQ EPSTSTPSVR EVLPATGPSK DADNISNCSE RRNVVKIRVR RSASSSKADG ADHQDHSHGG RNENEAGPCS SMSVDAPMVG APNEPPTTSN
1201: HNIEEQNSCH DRESRMSASV SNAKVMDTYE ISKELQCTAD SRIYAADSRL DAVPKDEFSP VLNVREDVDK PGSQLEGVST SYVGTQAPES VNGLHSKEKK
1301: RKDKKDKKRN RDEKRDKKDD PEYLAKKRLK KEKKKMEKEL ARKQKEGDRA TSQQDIVVKP SDSQGTVAAT PPAPEQSAEP QVSSKDAAVD TARTPPPTKK
1401: IKIKFKPLKK IG
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.