Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G213200.1 | Wheat | nucleus | 98.51 | 98.16 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 97.58 | 97.24 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 96.09 | 95.82 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 14.36 | 87.45 |
| Os09t0410125-00 | Rice | extracellular | 19.05 | 83.23 |
| KXG35610 | Sorghum | nucleus | 63.82 | 64.65 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 21.11 | 62.53 |
| Zm00001d020432_P001 | Maize | nucleus | 51.88 | 61.29 |
| Os09t0410300-01 | Rice | nucleus | 9.1 | 57.14 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 7.68 | 55.67 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 52.31 | 54.16 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 35.96 | 53.26 |
| KRH03813 | Soybean | nucleus | 51.24 | 51.95 |
| KRH56695 | Soybean | nucleus | 51.1 | 51.8 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 4.62 | 49.62 |
| Solyc03g119780.2.1 | Tomato | nucleus | 50.04 | 46.65 |
| CDX73029 | Canola | nucleus | 37.95 | 38.75 |
| CDX96499 | Canola | nucleus | 37.81 | 38.63 |
| AT1G73960.1 | Thale cress | cytosol | 38.02 | 38.49 |
| Bra015951.1-P | Field mustard | nucleus | 37.81 | 38.25 |
| PGSC0003DMT400014328 | Potato | nucleus | 9.03 | 22.05 |
Protein Annotations
| Gene3D:1.10.390.60 | MapMan:15.3.5.3.3 | Gene3D:2.60.40.1730 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0008237 | GO:GO:0008270 | GO:GO:0016787 | PFAM:PF01433 |
| PANTHER:PTHR15137 | InterPro:Peptidase_M1_N | SUPFAM:SSF48371 | SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 |
| EnsemblPlantsGene:TraesCS5A01G207000 | EnsemblPlants:TraesCS5A01G207000.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:+:417883499..417896290
Molecular Weight (calculated)
157065.0 Da
IEP (calculated)
6.374
GRAVY (calculated)
-0.505
Length
1407 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKARKQKPE GGAGGGPTVL HQKLCLSIDM ENQLIYGYTE MKVLLAENDS FALHADSMTI RNILVDGEAA EFEYSPHWKN VDDQSSWLSV SCLKTAADAA
0101: CSAYVSSLTS EAVPNLIISS ERSVKSTTEL LGDENGEKHE GIGGKHVQFS DDKAVKICNG SVEENGKEEE KENKKEDEKD NEKEEKTEME VETEKEKETE
0201: EEKDKDKEKD EEKEKEVTNE NEKEKEMQIE SEKVKNTKLV RVDYILEKAE TGVHFVNNVL HSNSQIRRAH CWFPCIDSAT QRCPFDLEFT VSTDLVAVSN
0301: GDLLYQVLSK EDPPRKTYVY KLSTPVSAQW ISLVVGPFEV LPDKNGISVS HMCLSPTLSK LDNTVSFFHD AYSCYEDYLA ASFPFGLYKQ IFLPSDMVVS
0401: PTSFGASTCI FSADILNDEK VIDQIIGTRI KLAYALARQW FGIYTSAEEP NDDWLLDGLA GFLTDLFIKR YLGNNEARYR RFKANCTVCQ FDVSGATALG
0501: SPDASTDLYG TQTLGSYGKI RSLKAVAVLQ TLEKQMGPDS FRKILQMIVA STRASRTLST KEFRHLANKI GNLERPFLKE FFPRWIESCG CPIMRLGISY
0601: NKRRNLVELA VSRGCTAKAD PGSDSHVNGD IQEGATGWPG MMSVRVHETD GVYDHPILPM AGEALQVVEL QCHSKLAAKR FQKTKKGSKP DGSDDNVDAS
0701: TQENRTSMDS PLLWIRVDPE MEYLAEIHFH QPIQMWINQL EKDKDVISQS QAIAVLEKLP QLSFAVINAL NNFLNDTKAF WRVRVEAAYA LAVTASEDTD
0801: LAGLLHLVKF YKSRRFDTDI GLPRPNDFHD IPEYFVLEAI PHAVALVRSS DKSSPRQAIE FILQLLKYND NNGNVYSDVY WLAAMVQAIG EVEFGQQGIG
0901: LLSSLLKRID RLLQFDNFMP GYNGVLTVSC IRALARIAER VSSSICLDRI CELIAPFRSM DKPWKVRIEA SRVLLDLELH HKGLDAALFL FLKYTDEERS
1001: LRGATKLAVH VLRICQANIE SNVTDQIKLP TLFGLLHLLS SKKAYNNVLL RHNVFCILQI AAGRSPTLYG VPKFVAPSPL VQEISFDQHT KADSSVPQLS
1101: RPQEPSTSTP SVREVLPATG PSKDADNISN CSERRNVVKI RVRRSASSSK ADGADHQDHS HGGRNENEAG PCSSMSVDAP MVGAPNEPPT TSNHNIEEQN
1201: SCHDRESRMS ASVSNAKVMD TYEISKELQC TADSRIDAAD SRLDVVPKDE FSPVVNVRED VDKPGSQLER VSTSYVGTQA PDSVNGLHSK EKKRKDKKDK
1301: KRNRDEKRDK KDDPEYLAKK RLKKEKKKME KELARKQKEG DRASSQQDIV VKPSDSQGTV AATPPAPEQS AEPQVSNKDA AVDTARTLTP PPTKKIKIKF
1401: KPLKKIG
0101: CSAYVSSLTS EAVPNLIISS ERSVKSTTEL LGDENGEKHE GIGGKHVQFS DDKAVKICNG SVEENGKEEE KENKKEDEKD NEKEEKTEME VETEKEKETE
0201: EEKDKDKEKD EEKEKEVTNE NEKEKEMQIE SEKVKNTKLV RVDYILEKAE TGVHFVNNVL HSNSQIRRAH CWFPCIDSAT QRCPFDLEFT VSTDLVAVSN
0301: GDLLYQVLSK EDPPRKTYVY KLSTPVSAQW ISLVVGPFEV LPDKNGISVS HMCLSPTLSK LDNTVSFFHD AYSCYEDYLA ASFPFGLYKQ IFLPSDMVVS
0401: PTSFGASTCI FSADILNDEK VIDQIIGTRI KLAYALARQW FGIYTSAEEP NDDWLLDGLA GFLTDLFIKR YLGNNEARYR RFKANCTVCQ FDVSGATALG
0501: SPDASTDLYG TQTLGSYGKI RSLKAVAVLQ TLEKQMGPDS FRKILQMIVA STRASRTLST KEFRHLANKI GNLERPFLKE FFPRWIESCG CPIMRLGISY
0601: NKRRNLVELA VSRGCTAKAD PGSDSHVNGD IQEGATGWPG MMSVRVHETD GVYDHPILPM AGEALQVVEL QCHSKLAAKR FQKTKKGSKP DGSDDNVDAS
0701: TQENRTSMDS PLLWIRVDPE MEYLAEIHFH QPIQMWINQL EKDKDVISQS QAIAVLEKLP QLSFAVINAL NNFLNDTKAF WRVRVEAAYA LAVTASEDTD
0801: LAGLLHLVKF YKSRRFDTDI GLPRPNDFHD IPEYFVLEAI PHAVALVRSS DKSSPRQAIE FILQLLKYND NNGNVYSDVY WLAAMVQAIG EVEFGQQGIG
0901: LLSSLLKRID RLLQFDNFMP GYNGVLTVSC IRALARIAER VSSSICLDRI CELIAPFRSM DKPWKVRIEA SRVLLDLELH HKGLDAALFL FLKYTDEERS
1001: LRGATKLAVH VLRICQANIE SNVTDQIKLP TLFGLLHLLS SKKAYNNVLL RHNVFCILQI AAGRSPTLYG VPKFVAPSPL VQEISFDQHT KADSSVPQLS
1101: RPQEPSTSTP SVREVLPATG PSKDADNISN CSERRNVVKI RVRRSASSSK ADGADHQDHS HGGRNENEAG PCSSMSVDAP MVGAPNEPPT TSNHNIEEQN
1201: SCHDRESRMS ASVSNAKVMD TYEISKELQC TADSRIDAAD SRLDVVPKDE FSPVVNVRED VDKPGSQLER VSTSYVGTQA PDSVNGLHSK EKKRKDKKDK
1301: KRNRDEKRDK KDDPEYLAKK RLKKEKKKME KELARKQKEG DRASSQQDIV VKPSDSQGTV AATPPAPEQS AEPQVSNKDA AVDTARTLTP PPTKKIKIKF
1401: KPLKKIG
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.