Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G115120.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | HORVU7Hr1G115120.1 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0410125-00 | Rice | extracellular | 73.59 | 52.8 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 65.8 | 16.0 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 89.18 | 14.6 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 87.45 | 14.36 |
| TraesCS5D01G213200.1 | Wheat | nucleus | 87.01 | 14.24 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 86.58 | 14.16 |
| Zm00001d020432_P001 | Maize | nucleus | 69.26 | 13.43 |
| KXG35610 | Sorghum | nucleus | 69.26 | 11.52 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 62.77 | 10.67 |
| KRH03813 | Soybean | nucleus | 60.17 | 10.01 |
| KRH56695 | Soybean | nucleus | 59.74 | 9.94 |
| Solyc03g119780.2.1 | Tomato | nucleus | 60.61 | 9.28 |
| CDX96499 | Canola | nucleus | 48.92 | 8.21 |
| CDX73029 | Canola | nucleus | 48.92 | 8.2 |
| Bra015951.1-P | Field mustard | nucleus | 48.92 | 8.12 |
| AT1G73960.1 | Thale cress | cytosol | 48.48 | 8.06 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 3.9 | 5.88 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 2.16 | 3.82 |
| Os09t0410300-01 | Rice | nucleus | 1.73 | 1.79 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 1.3 | 0.63 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 0.43 | 0.52 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G023590.2 | EnsemblPlantsGene:HORVU3Hr1G023590 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | InterPro:TAF2 | PANTHER:PTHR15137 | UniParc:UPI000B47349E | UniProt:A0A287KFI3 |
| MapMan:15.3.5.3.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:87165289..87168011
Molecular Weight (calculated)
26017.2 Da
IEP (calculated)
7.273
GRAVY (calculated)
-0.393
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLGISYSKR RNLVELAVSR GCTAKADPGS DNHVNGDIQE GATGWPGMMS VRVHETGGAY DHPILPMAGE ALHVVELQCH SKVAAKRFQK TKKSSKPDGS
101: DDNVDASTQE NRTSMDSPLL WIRVDPEMEY LAEIHFHQPI QMWINQLEKD KDVISQSQEI TVLEKLPQLS FAVINALNNF LNDTKDTDLA GLLHLVKFYK
201: ATGLILILDY PGQTTSMIFQ NTLFLRRRRR L
101: DDNVDASTQE NRTSMDSPLL WIRVDPEMEY LAEIHFHQPI QMWINQLEKD KDVISQSQEI TVLEKLPQLS FAVINALNNF LNDTKDTDLA GLLHLVKFYK
201: ATGLILILDY PGQTTSMIFQ NTLFLRRRRR L
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.