Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G207000.1 | Wheat | nucleus | 98.16 | 98.51 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 97.8 | 97.8 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 96.1 | 96.17 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 14.24 | 87.01 |
| Os09t0410125-00 | Rice | extracellular | 18.98 | 83.23 |
| KXG35610 | Sorghum | nucleus | 64.02 | 65.08 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 20.89 | 62.11 |
| Zm00001d020432_P001 | Maize | nucleus | 52.12 | 61.8 |
| Os09t0410300-01 | Rice | nucleus | 9.07 | 57.14 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 7.65 | 55.67 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 52.2 | 54.23 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 35.76 | 53.16 |
| KRH03813 | Soybean | nucleus | 51.13 | 52.02 |
| KRH56695 | Soybean | nucleus | 50.92 | 51.8 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 4.67 | 50.38 |
| Solyc03g119780.2.1 | Tomato | nucleus | 49.86 | 46.65 |
| CDX73029 | Canola | nucleus | 37.96 | 38.9 |
| CDX96499 | Canola | nucleus | 37.82 | 38.78 |
| AT1G73960.1 | Thale cress | cytosol | 38.03 | 38.63 |
| Bra015951.1-P | Field mustard | nucleus | 37.82 | 38.39 |
| PGSC0003DMT400014328 | Potato | nucleus | 8.99 | 22.05 |
Protein Annotations
| Gene3D:1.10.390.60 | Gene3D:1.25.10.10 | MapMan:15.3.5.3.3 | Gene3D:2.60.40.1730 | InterPro:ARM-like | InterPro:ARM-type_fold |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0008237 | GO:GO:0008270 |
| GO:GO:0016787 | InterPro:IPR011989 | PFAM:PF01433 | PANTHER:PTHR15137 | InterPro:Peptidase_M1_N | SUPFAM:SSF48371 |
| SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 | EnsemblPlantsGene:TraesCS5D01G213200 | EnsemblPlants:TraesCS5D01G213200.1 | SEG:seg |
Description
No Description!
Coordinates
chr5D:+:322368949..322382218
Molecular Weight (calculated)
157356.0 Da
IEP (calculated)
6.374
GRAVY (calculated)
-0.514
Length
1412 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKARKQKPE GGAGGGPTVL HQKLCLSIDM ENQLIYGYTE MKVLLAENDS FALHADSMTI RNILVDGEAA EFEYSPHWKN VDDQSSWLSV SCLKTAADAA
0101: CSAYVSSLTS EAVPNLIISS ERSVKSTTEL PGDDNGEKHE GIGGKHVQFS DDKAVKICNG SAEENGKEEE KENKKEDAKD NEKEEKTEME VDTEKAKETE
0201: EEKEKEKEKE KEEKDEEKEK EVINENEKEK EMQIENEKVK NTKLVRVDYI LEKAETGVHF VNNVLHSNSQ IRRAHCWFPC IDSATQRCPF DLEFTVSTDL
0301: VAVSNGDLLY QVLSKEDPPR KTYVYKLSTP VSAQWISLVV GPFEVLPDKN GISVSHMCLS STLSKLDNTI SFFHDAYSCY EDYLAASFPF GLYKQIFLPS
0401: EMVVSPTSFG ASTCIFSADI LNDEKVIDQI IGTRIKLAYA LARQWFGIYT SAEEPNDDWL LDGLAGFLTD LFIKRYLGNN EARYRRFKAN CTVCQFDVSG
0501: ATALGSPDAS TDLYGTQTLG SYGKIRSLKA VAVLQTLEKQ MGPDSFRKIL QMIVASTRAS RTLSTKEFRH LANKIGNLER PFLKEFFPRW IESCGCPIMR
0601: LGISYNKRRN LVELAVSRGC TAKADPGSDS HVNGDIQEGA TGWPGMMSVR VHETDGVYDH PILPMAGEAL QVVELQCHSK LAAKRFQKTK KGSKPDGSDD
0701: NVDASTQENR TSMDSPLLWI RVDPEMEYLA EIHFHQPIQM WINQLEKDKD VISQSQAIAV LEKLPQLSFA VINALNNFLN DTKAFWRVRV EAAYALAVTA
0801: SEETDLAGLL HLVKFYKSRR FDTDIGLPRP NDFHDIPEYF VLEAIPHAVA LVRSSDKSSP RQAIEFILQL LKYNDNNGNV YSDVYWLAAM VQAIGEVEFG
0901: QQGIGLLSSL LKRIDRLLQF DNFMPGYNGV LTVSCIRALA RIAERVSSSI CLDRICELIA PFRSMDKPWK VRIEASRVLL DLELHHKGLD AALLLFLKYT
1001: DEERSLRGAT KLAVHVLRIC QANVESNVTD QIKLPTLFGL LHLLSSKKAY NNVLLRHNVF CILQIAAGRS PTLYGVPKFV APSPLVQEIS VDQHTKADSS
1101: VPQLSRPQEP STSTPSVREV LPATGPSKDA DNISNCSERR NVVKIRVRRS ASSSKADGAD HQDHSHGGRN ENEAGPCSSM SVDAPMVGAP NEPPTTSNHN
1201: IEEQNSCHDR ESRMSASVSN AKVMDTYEIS KELQCTADSR TDAADSRLDA VPKDEFSPAV NVREDVDKPG SQLEGVSTSY VGTQAPDSVN GLHSKEKKRK
1301: DKKDKKRNRD EKRDKKDDPE YLAKKRLKKE KKKMEKELAR KQKEGDRASS QQDIVVKPSD SQGTVAATPP APEQSAEPQV SNKDAAVDTA RTLTPPPTKK
1401: IKIKFKPLKK IG
0101: CSAYVSSLTS EAVPNLIISS ERSVKSTTEL PGDDNGEKHE GIGGKHVQFS DDKAVKICNG SAEENGKEEE KENKKEDAKD NEKEEKTEME VDTEKAKETE
0201: EEKEKEKEKE KEEKDEEKEK EVINENEKEK EMQIENEKVK NTKLVRVDYI LEKAETGVHF VNNVLHSNSQ IRRAHCWFPC IDSATQRCPF DLEFTVSTDL
0301: VAVSNGDLLY QVLSKEDPPR KTYVYKLSTP VSAQWISLVV GPFEVLPDKN GISVSHMCLS STLSKLDNTI SFFHDAYSCY EDYLAASFPF GLYKQIFLPS
0401: EMVVSPTSFG ASTCIFSADI LNDEKVIDQI IGTRIKLAYA LARQWFGIYT SAEEPNDDWL LDGLAGFLTD LFIKRYLGNN EARYRRFKAN CTVCQFDVSG
0501: ATALGSPDAS TDLYGTQTLG SYGKIRSLKA VAVLQTLEKQ MGPDSFRKIL QMIVASTRAS RTLSTKEFRH LANKIGNLER PFLKEFFPRW IESCGCPIMR
0601: LGISYNKRRN LVELAVSRGC TAKADPGSDS HVNGDIQEGA TGWPGMMSVR VHETDGVYDH PILPMAGEAL QVVELQCHSK LAAKRFQKTK KGSKPDGSDD
0701: NVDASTQENR TSMDSPLLWI RVDPEMEYLA EIHFHQPIQM WINQLEKDKD VISQSQAIAV LEKLPQLSFA VINALNNFLN DTKAFWRVRV EAAYALAVTA
0801: SEETDLAGLL HLVKFYKSRR FDTDIGLPRP NDFHDIPEYF VLEAIPHAVA LVRSSDKSSP RQAIEFILQL LKYNDNNGNV YSDVYWLAAM VQAIGEVEFG
0901: QQGIGLLSSL LKRIDRLLQF DNFMPGYNGV LTVSCIRALA RIAERVSSSI CLDRICELIA PFRSMDKPWK VRIEASRVLL DLELHHKGLD AALLLFLKYT
1001: DEERSLRGAT KLAVHVLRIC QANVESNVTD QIKLPTLFGL LHLLSSKKAY NNVLLRHNVF CILQIAAGRS PTLYGVPKFV APSPLVQEIS VDQHTKADSS
1101: VPQLSRPQEP STSTPSVREV LPATGPSKDA DNISNCSERR NVVKIRVRRS ASSSKADGAD HQDHSHGGRN ENEAGPCSSM SVDAPMVGAP NEPPTTSNHN
1201: IEEQNSCHDR ESRMSASVSN AKVMDTYEIS KELQCTADSR TDAADSRLDA VPKDEFSPAV NVREDVDKPG SQLEGVSTSY VGTQAPDSVN GLHSKEKKRK
1301: DKKDKKRNRD EKRDKKDDPE YLAKKRLKKE KKKMEKELAR KQKEGDRASS QQDIVVKPSD SQGTVAATPP APEQSAEPQV SNKDAAVDTA RTLTPPPTKK
1401: IKIKFKPLKK IG
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.