Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P11610_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | GSMUA_Achr2P11610_001 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 16.0 | 65.8 |
| Os09t0410125-00 | Rice | extracellular | 21.05 | 62.11 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 10.0 | 62.09 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 7.37 | 53.44 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 55.47 | 38.78 |
| KRH56695 | Soybean | nucleus | 54.42 | 37.25 |
| KRH03813 | Soybean | nucleus | 53.89 | 36.89 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 53.26 | 35.96 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 53.37 | 35.91 |
| TraesCS5D01G213200.1 | Wheat | nucleus | 53.16 | 35.76 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 52.74 | 35.51 |
| Solyc03g119780.2.1 | Tomato | nucleus | 51.16 | 32.21 |
| Os09t0410300-01 | Rice | nucleus | 7.47 | 31.7 |
| Zm00001d020432_P001 | Maize | nucleus | 36.32 | 28.97 |
| KXG35610 | Sorghum | nucleus | 40.84 | 27.93 |
| CDX96499 | Canola | nucleus | 35.79 | 24.69 |
| CDX73029 | Canola | nucleus | 35.79 | 24.67 |
| AT1G73960.1 | Thale cress | cytosol | 36.0 | 24.6 |
| Bra015951.1-P | Field mustard | nucleus | 35.79 | 24.44 |
| PGSC0003DMT400014328 | Potato | nucleus | 14.21 | 23.44 |
| Zm00001d005736_P003 | Maize | cytosol | 5.16 | 13.35 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 0.95 | 4.64 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 1.26 | 2.53 |
| Zm00001d025266_P001 | Maize | cytosol | 0.74 | 2.18 |
Protein Annotations
| MapMan:15.3.5.3.3 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005319 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 | EnsemblPlantsGene:GSMUA_Achr3G07290_001 | EnsemblPlants:GSMUA_Achr3P07290_001 |
| EnsemblPlants:GSMUA_Achr3T07290_001 | UniProt:M0SCJ6 | PANTHER:PTHR15137 | SUPFAM:SSF48371 | InterPro:TAF2 | UniParc:UPI000295A290 |
| SEG:seg | : | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G07290_001]
Coordinates
chr3:-:4958898..4979870
Molecular Weight (calculated)
107006.0 Da
IEP (calculated)
8.146
GRAVY (calculated)
-0.376
Length
950 amino acids
Sequence
(BLAST)
(BLAST)
001: MILHRDILWY GFIPIRYAQS VLVLSKAELI STKFLGAIGS TRSMRTLSTK EFRHLANKVG NLERPFLKEF FPRWVESCGC PIMRMGLSYN KRRNMIELAV
101: VRGCTAKSSS AFNQDDENRE GHPGWPGMMS VRVHELDGVY DHPVLPMAGE SCQLLEIQCH SKLAAKRIQK PKKGSKADGS DDNADVVSTQ DMRSGVDSPL
201: LWIRVDPEME YLAEIHFYQP VQMWINQLEK DKDVVAQSQA ISMLEMLPQL SFAVVNALNS FLNDSKAFWR VRIEAAYALA HTTSEDTDLA GLFHLIKFYK
301: SRRFDMDTGL PRANSFHEVS EYFVLEIITS IKITSLISLY MQHDYHQNIK LCLSNTLAIP HAVALVRASD KKSPREAIEF VLQLLKYNDN NGNPYSDVYW
401: LASLVQSIGE LEFGQQGILF LSSLLKRIDQ LMQFDSLMPS YNGILTISCI RTLAQMALKL SNSVPLDKVR ELIEPYRNVE NTSWKVRIEA SRALLDLEFH
501: SKGIDAVLSL FMKFLEEECS LRGEVKLAVH VMHICQANLE SESGMQIACP TLVSLLHLLT SRKAFNNVFL RHHLFCILQI LAGRSPTLYG ISRTQVHASV
601: AAETCEQVTR PASLKLKIPK PQEPLAETVK LSEALPTAET VREGDTVSNC SERRVNVIKI RVKQRSSSSK ADDADHQMEY SRGGPNDAEL GPCSSVSVDA
701: PARGATEPFN ISSQNNEEVS SSHDRESRMT ASIGSAKLAS EEKLGKELQC TADSRLDALS KDQLSLKNIN VEEMVISKTA CLQDLSVVRH DGEGAMPPEN
801: AEELKEKGKK DKKDRERKRR RDDKVDKKDD PEYIEKKRLK KERKRKEKEL AKMQKGGDRS SSDMKISSRP SESRGSLVDS KVEPGVEIHA LKNNESISET
901: AQGSITSSKF RIKIKTAIDE AFMMNMLYET KASMYIRVGH GNTLFFFMQG
101: VRGCTAKSSS AFNQDDENRE GHPGWPGMMS VRVHELDGVY DHPVLPMAGE SCQLLEIQCH SKLAAKRIQK PKKGSKADGS DDNADVVSTQ DMRSGVDSPL
201: LWIRVDPEME YLAEIHFYQP VQMWINQLEK DKDVVAQSQA ISMLEMLPQL SFAVVNALNS FLNDSKAFWR VRIEAAYALA HTTSEDTDLA GLFHLIKFYK
301: SRRFDMDTGL PRANSFHEVS EYFVLEIITS IKITSLISLY MQHDYHQNIK LCLSNTLAIP HAVALVRASD KKSPREAIEF VLQLLKYNDN NGNPYSDVYW
401: LASLVQSIGE LEFGQQGILF LSSLLKRIDQ LMQFDSLMPS YNGILTISCI RTLAQMALKL SNSVPLDKVR ELIEPYRNVE NTSWKVRIEA SRALLDLEFH
501: SKGIDAVLSL FMKFLEEECS LRGEVKLAVH VMHICQANLE SESGMQIACP TLVSLLHLLT SRKAFNNVFL RHHLFCILQI LAGRSPTLYG ISRTQVHASV
601: AAETCEQVTR PASLKLKIPK PQEPLAETVK LSEALPTAET VREGDTVSNC SERRVNVIKI RVKQRSSSSK ADDADHQMEY SRGGPNDAEL GPCSSVSVDA
701: PARGATEPFN ISSQNNEEVS SSHDRESRMT ASIGSAKLAS EEKLGKELQC TADSRLDALS KDQLSLKNIN VEEMVISKTA CLQDLSVVRH DGEGAMPPEN
801: AEELKEKGKK DKKDRERKRR RDDKVDKKDD PEYIEKKRLK KERKRKEKEL AKMQKGGDRS SSDMKISSRP SESRGSLVDS KVEPGVEIHA LKNNESISET
901: AQGSITSSKF RIKIKTAIDE AFMMNMLYET KASMYIRVGH GNTLFFFMQG
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.