Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g03940.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | VIT_12s0028g03940.t01 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56695 | Soybean | nucleus | 70.86 | 69.38 |
| KRH03813 | Soybean | nucleus | 70.64 | 69.16 |
| Os09t0410125-00 | Rice | extracellular | 16.11 | 68.01 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 23.11 | 66.11 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 10.67 | 62.77 |
| Solyc03g119780.2.1 | Tomato | nucleus | 67.33 | 60.64 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 38.78 | 55.47 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 6.18 | 54.9 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 54.16 | 52.31 |
| TraesCS5D01G213200.1 | Wheat | nucleus | 54.23 | 52.2 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 54.01 | 51.98 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 53.79 | 51.81 |
| AT1G73960.1 | Thale cress | cytosol | 48.86 | 47.77 |
| CDX73029 | Canola | nucleus | 48.12 | 47.46 |
| CDX96499 | Canola | nucleus | 48.05 | 47.42 |
| Bra015951.1-P | Field mustard | nucleus | 48.2 | 47.09 |
| KXG35610 | Sorghum | nucleus | 42.6 | 41.68 |
| Zm00001d020432_P001 | Maize | nucleus | 33.63 | 38.37 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 4.93 | 34.54 |
| Zm00001d005736_P003 | Maize | cytosol | 8.9 | 32.97 |
| PGSC0003DMT400014328 | Potato | nucleus | 13.24 | 31.25 |
| Zm00001d025266_P001 | Maize | cytosol | 7.36 | 31.15 |
| Os09t0410300-01 | Rice | nucleus | 4.78 | 29.02 |
Protein Annotations
| Gene3D:1.10.390.60 | EntrezGene:100266355 | wikigene:100266355 | MapMan:15.3.5.3.3 | InterPro:ARM-type_fold | ProteinID:CCB43191 |
| ProteinID:CCB43191.1 | ncoils:Coil | UniProt:F6GTI2 | EMBL:FN594950 | GO:GO:0001075 | GO:GO:0001129 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008237 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045944 |
| GO:GO:0051123 | EntrezGene:LOC100266355 | wikigene:LOC100266355 | MEROPS:M01.972 | PFAM:PF01433 | PANTHER:PTHR15137 |
| InterPro:Peptidase_M1_N | SUPFAM:SSF48371 | SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 | UniParc:UPI000210809C |
| ArrayExpress:VIT_17s0000g04200 | EnsemblPlantsGene:VIT_17s0000g04200 | EnsemblPlants:VIT_17s0000g04200.t01 | unigene:Vvi.10426 | RefSeq:XP_002273351 | RefSeq:XP_002273351.1 |
| RefSeq:XP_002273382 | RefSeq:XP_002273382.1 | RefSeq:XP_010663541.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr17:-:4392279..4459516
Molecular Weight (calculated)
151955.0 Da
IEP (calculated)
7.043
GRAVY (calculated)
-0.352
Length
1359 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKPRKPKTD DNTKPENSNS RAVVRHQKLC LSIDIDKRRI YGYTELEIAV PDIGIVGLHA ENLVIESVSV DGEPTEFEFY PHHQHTESEK RWSSVLSASS
0101: AADVASSMYV SALERELDPN LLIMCCKPEK SASEQQGQQS LENGLHSSGE PKQNVKLVRV DYWVERAETG IHFEDNVLHT DNQIRRARCW FPCMDDTSQC
0201: CCYDLEFTVA HNLVAVSTGS LLYQVLSKDD PPRKTYVYKL NVPVTARWIQ LAVAPFEVLP DRHSGLLSYL CLPANLPKLW NTVGFFHSAF SHYEDYLSAS
0301: FPFGSYKQVF IAPEMAISSL TLGASMSIFS SQILFDEKVI DQTIDTRIKL AYALARQWFG VFISPEAPND EWLLDGLAGF LTDSFVKRFL GNNEARYRRY
0401: KANCAVCKAD DSGATALSSS ASCKDLYGTQ CIGLYGKIRS WKSVAILQML EKQMGPESFR KILQTIVFRA QDTTRSLRTL STKEFRHFAN KVGNLERPFL
0501: KEFFPRWVGS CGCPVLRAGL SYNKRKNLVE LAVLRGCTAA PDTNTMVLNG NIDSENREVD IGWPGMMSIR VHELDGMYDH PILPMAGETW QLLEIQCHSK
0601: LAARRFQKPK KGSKPDGSDD NGDVPAVDMR SNTESPLLWL RVDPELEYLA EIHFNQPAQM WINQLERDKD VVAQAQAIAT LEALPQLSFS VVNALNNFLS
0701: DSKAFWRVRI EAAFALANTA SEETDWAGLL HLVKFYKSRR FDANIGLPKP NDFHDFPEYF VLEAIPHAIA MVRAADKKSP REAVEFVLQL LKYNDNNGNP
0801: YSDVFWLAAL VQSVGELEFG QQSILFLSSL LKRIDRLLQF DRLMPSYNGI LTISCIRTLT QIGLKLSGFI PLDRVIELVK PFRDFQAIWQ VRIEASRALL
0901: GLEFHFKGID AALSLFIKYV EEEPSIRGQV KLGVHAMRLC QIKGGSESDN DIKSSTLVAL LRLLESRIAF NNVFLRHHLF CILRILAGRL PTLYGVPRDQ
1001: IPQMDPAEIC SEQKNGFITI VKETKSLEPP VDTPNVSHDG LALPEASREA DTVSNSHERK MPVVKIRVRQ SAASSRAEEA DNPTVDKSQG GHNEIDRGGS
1101: SSISVDAPQR NFTEAVSISN QNLEEVNSCH DRGSQMTASI GSAKLASDGD EVGKELQCTA DSGKISVLPP SDEGPLFSGI QDIQGGSIQD NIVDVDAQKY
1201: ASLQTLSVMR HEVEGGTVAA VKPQSHGKAK EKKEKEKKRK REDPEYLERK RLKKEKKQKE KEMAQLLSGE AKQKEKEMSE LLSGEAKQKE KEMTELLSGD
1301: AKASSVELGV KKVESGIKLA TVQYKASESS VSKIVTTKVE ASEGSSAPKF RIKIKNRSK
0101: AADVASSMYV SALERELDPN LLIMCCKPEK SASEQQGQQS LENGLHSSGE PKQNVKLVRV DYWVERAETG IHFEDNVLHT DNQIRRARCW FPCMDDTSQC
0201: CCYDLEFTVA HNLVAVSTGS LLYQVLSKDD PPRKTYVYKL NVPVTARWIQ LAVAPFEVLP DRHSGLLSYL CLPANLPKLW NTVGFFHSAF SHYEDYLSAS
0301: FPFGSYKQVF IAPEMAISSL TLGASMSIFS SQILFDEKVI DQTIDTRIKL AYALARQWFG VFISPEAPND EWLLDGLAGF LTDSFVKRFL GNNEARYRRY
0401: KANCAVCKAD DSGATALSSS ASCKDLYGTQ CIGLYGKIRS WKSVAILQML EKQMGPESFR KILQTIVFRA QDTTRSLRTL STKEFRHFAN KVGNLERPFL
0501: KEFFPRWVGS CGCPVLRAGL SYNKRKNLVE LAVLRGCTAA PDTNTMVLNG NIDSENREVD IGWPGMMSIR VHELDGMYDH PILPMAGETW QLLEIQCHSK
0601: LAARRFQKPK KGSKPDGSDD NGDVPAVDMR SNTESPLLWL RVDPELEYLA EIHFNQPAQM WINQLERDKD VVAQAQAIAT LEALPQLSFS VVNALNNFLS
0701: DSKAFWRVRI EAAFALANTA SEETDWAGLL HLVKFYKSRR FDANIGLPKP NDFHDFPEYF VLEAIPHAIA MVRAADKKSP REAVEFVLQL LKYNDNNGNP
0801: YSDVFWLAAL VQSVGELEFG QQSILFLSSL LKRIDRLLQF DRLMPSYNGI LTISCIRTLT QIGLKLSGFI PLDRVIELVK PFRDFQAIWQ VRIEASRALL
0901: GLEFHFKGID AALSLFIKYV EEEPSIRGQV KLGVHAMRLC QIKGGSESDN DIKSSTLVAL LRLLESRIAF NNVFLRHHLF CILRILAGRL PTLYGVPRDQ
1001: IPQMDPAEIC SEQKNGFITI VKETKSLEPP VDTPNVSHDG LALPEASREA DTVSNSHERK MPVVKIRVRQ SAASSRAEEA DNPTVDKSQG GHNEIDRGGS
1101: SSISVDAPQR NFTEAVSISN QNLEEVNSCH DRGSQMTASI GSAKLASDGD EVGKELQCTA DSGKISVLPP SDEGPLFSGI QDIQGGSIQD NIVDVDAQKY
1201: ASLQTLSVMR HEVEGGTVAA VKPQSHGKAK EKKEKEKKRK REDPEYLERK RLKKEKKQKE KEMAQLLSGE AKQKEKEMSE LLSGEAKQKE KEMTELLSGD
1301: AKASSVELGV KKVESGIKLA TVQYKASESS VSKIVTTKVE ASEGSSAPKF RIKIKNRSK
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.