Factsheet for Os09t0410300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0645700-01
Os06t0645800-01
Os06t0645901-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73960.1	Os06t0645700-01	AT1G32750.1	17340043
AT1G73960.1	Os06t0645800-01	AT1G32750.1	17340043
AT1G73960.1	Os06t0645901-00	AT1G32750.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014328	Potato	nucleus	27.23	10.59
Zm00001d020432_P001	Maize	nucleus	48.66	9.15
TraesCS5A01G207000.1	Wheat	nucleus	57.14	9.1
TraesCS5D01G213200.1	Wheat	nucleus	57.14	9.07
HORVU5Hr1G061200.9	Barley	nucleus	55.8	8.86
TraesCS5B01G205400.1	Wheat	nucleus	55.36	8.78
KXG35610	Sorghum	nucleus	52.23	8.42
GSMUA_Achr3P07290_001	Banana	extracellular	31.7	7.47
KRH03813	Soybean	nucleus	33.48	5.4
KRH56695	Soybean	nucleus	32.59	5.26
VIT_17s0000g04200.t01	Wine grape	nucleus	29.02	4.78
Solyc03g119780.2.1	Tomato	nucleus	32.14	4.77
CDX96499	Canola	nucleus	27.23	4.43
Bra015951.1-P	Field mustard	nucleus	27.23	4.39
CDX73029	Canola	nucleus	26.79	4.35
AT1G73960.1	Thale cress	cytosol	26.79	4.32
KRH54756	Soybean	endoplasmic reticulum, extracellular, plasma membrane	1.34	2.29
HORVU3Hr1G023590.2	Barley	mitochondrion	1.79	1.73
GSMUA_Achr3P07300_001	Banana	nucleus	3.57	1.68
Os09t0409950-01	Rice	cytosol, mitochondrion, nucleus	0.89	1.03
Os09t0410125-00	Rice	extracellular	1.34	0.93

Protein Annotations

MapMan:35.2	ProteinID:BAD33787.1	ProteinID:BAF25061.1	ProteinID:BAT08039.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008237
GO:GO:0008270	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:Os09g0410300	EnsemblPlants:Os09t0410300-01	UniProt:Q69NE0
UniParc:UPI00003CE88E	SEG:seg	:	:	:	:

Description

cold tolerance at seedling stage (QTL)-9Similar to BRI1-KD interacting protein 120 (Fragment). (Os09t0410300-01)

Coordinates

chr9:+:14545092..14547798

Molecular Weight (calculated)

25284.8 Da

IEP (calculated)

9.874

GRAVY (calculated)

-1.360

Length

224 amino acids

Sequence
(BLAST)

001: MSVDAPMTEA PEPVNVSNHN IEEQNSCHDR EQNSCHDRES RMSASIGNVK LMDKHEVSKE LQCTADSRLD ALPKDHFSPV VNGQEVLDKP RSQLEVVSTS
101: YDGNQAPDSM NGLETKEKKK DKKDKKRHRD KKDDPEYLEK KRLKKEKKRM EKEKGKKQKE GEGVSSSEQK NTAKPSDSQG TSSARPPAPM RIPEPKISNV
201: GTPVDTTRTL TTTKIRIKVK PLQR

Best Arabidopsis Sequence Match ( AT1G73960.3 )
(BLAST)

0001: MEYVGVLKRE DTANLLINCC KPSKDLSEQL DSVTLENGSQ SSGEAKQNVK LIRINYWVEK IESGIHFDGN IVHTDNQMRR ARCWFPCIDD EYHRCSFDLE
0101: FTVPHNFVAV SVGKLLYQVM CKEDTTQKTY VYELAIPIAP RWVSLVAGPL EILPDQTNFL ISNLCLPHDL SRLRNTMEFF HEAYSYYEDY LSANFPFGFY
0201: KQVFLPPEMV VTSSTSGASL SIFSSHILYD ERVIDQTIDT RIKLASALAK QWFGVYITPE SPNDDWLLDG LAGFLTDMFI KQFLGNNEAR YRRYKANCAV
0301: CKADDSGAMC LSSSPSCRDL FGTHSIGMHG KIRSWKSGAV LQMLEKQMGS DSFRKILQKI ISRAKDPSNS IRSLSTKEFR QFANKIGNLE RPFLKEFFQR
0401: WVASYGCPVL RIGLSYNKRK NNVEMAALRE CTAALDARLS VIGATSDSES RDVDAGWPGI MSIRVYELDG MSDHPKLPMA GDRWQLLELP CHSKLAAKRY
0501: QKPKKGGKPD GAEDNVDAIA PLENKTSIES PLAWIKADPE MEYIAEIHLH QPLQMWVNQL EKDGDVVAQA QAIASLEALK QHSFSIVNAL KNVLTDSKVF
0601: WRIRIAAAFA LAKTASEESD WAGLQHLIKF YKSRRFDAEI GLPKPNDFRD FPEYFVLEAI PHAIAIVRGA EGKSPREAVE FILQLLKYND NSGNSYSDVF
0701: WLAVLVQSVG DLEFCQQSLT FLAPLLKRID RLLQFDRLMP SYNGILTISC IRTLAQTALK LSDSISFDHI CKLIEPFRNS DTILQIRIEG SRALLDIEYQ
0801: SKGISSALLL FMKYLVEESS LRGQVKLCVH TMRLCQIAVG CDSDDCVDTV TLLDLLHLFK SHVVFNNELL RYYLFCIFQI LAGRPPTLFG VPKEKPLQLV
0901: DVEACIEPKN VFLVPGAEAG EPSLSALGDA KGQSLDVAPY GVPIIPQEMF MPIVPELMLP EPVAAYDETQ HLEPRMESQN QPSHENPIVH EIPSDVEGPT
1001: EELAHREANP PTKEPQKEPD VVSVSVSHEV KKSVIRIKVR PSGATSRAEG SARTIERSQG IVVRHDIDRG QTSSASVDAP QRISTDAVSI SNQNHVEEVN
1101: SCHDVGSRMT ASIGSVKFAS EGDIFGKELQ CTAESGKPST SQKADNNNRT VPPSFLPLDH SMENEAQQKY ASLQTLSIGK EKEKKKDKEK KEKKRKREDP
1201: VYLEKKRLKK EKKRKEKEMA KLVSSTTDPA KKKIESVAEV KEEEPSDGAM LIKVEPKTEP STAEARPLPK FRIKLKSKAF NNS

Arabidopsis Description

TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.