Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g006820.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | Solyc07g006820.2.1 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 60.64 | 67.33 |
| Os09t0410125-00 | Rice | extracellular | 13.98 | 65.53 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 19.75 | 62.74 |
| KRH56695 | Soybean | nucleus | 57.32 | 62.32 |
| KRH03813 | Soybean | nucleus | 56.66 | 61.6 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 9.28 | 60.61 |
| PGSC0003DMT400014328 | Potato | nucleus | 20.74 | 54.34 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 5.5 | 54.25 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 32.21 | 51.16 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 46.65 | 50.04 |
| TraesCS5D01G213200.1 | Wheat | nucleus | 46.65 | 49.86 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 46.39 | 49.58 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 46.26 | 49.47 |
| CDX73029 | Canola | nucleus | 41.29 | 45.21 |
| AT1G73960.1 | Thale cress | cytosol | 41.48 | 45.04 |
| CDX96499 | Canola | nucleus | 41.02 | 44.95 |
| Bra015951.1-P | Field mustard | nucleus | 41.02 | 44.5 |
| KXG35610 | Sorghum | nucleus | 36.25 | 39.38 |
| Zm00001d020432_P001 | Maize | nucleus | 28.43 | 36.02 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 4.37 | 34.02 |
| Zm00001d005736_P003 | Maize | cytosol | 7.82 | 32.15 |
| Os09t0410300-01 | Rice | nucleus | 4.77 | 32.14 |
| Zm00001d025266_P001 | Maize | cytosol | 6.49 | 30.53 |
Protein Annotations
| Gene3D:1.10.390.60 | MapMan:15.3.5.3.3 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0001075 | GO:GO:0001129 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008237 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045944 | GO:GO:0051123 | UniProt:K4BMC7 |
| PFAM:PF01433 | PANTHER:PTHR15137 | InterPro:Peptidase_M1_N | SUPFAM:SSF48371 | SUPFAM:SSF55486 | SUPFAM:SSF63737 |
| EnsemblPlantsGene:Solyc03g119780.2 | EnsemblPlants:Solyc03g119780.2.1 | InterPro:TAF2 | UniParc:UPI00027667B7 | SEG:seg | : |
Description
No Description!
Coordinates
chr3:-:68343333..68358409
Molecular Weight (calculated)
168332.0 Da
IEP (calculated)
6.450
GRAVY (calculated)
-0.353
Length
1509 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKPRKGKIE EQKGDNSEAV VRHQKLCLSI DMDKRRIYGY TELDVIVPEN GILGLHADNL VIDSVTVDGE PTEFEVFPHY LALENGDRWC AVSSATSAAD
0101: AAGSVYLSHL DRELLSNLLI MCKKPAEHDI ERQEMHLENG LNSSAENNQN VKKVRIDYWV EKAETGIHFD GDVLHTDSQI RRARCWFPCM DDNLQCCCYD
0201: LEFTVASNLV AVSTGSLLYQ IWTKDVPARK TFVYRLSTPV NARWISLAVA PFEILPDSTI TYLSHICLPA DLTKLRHTVG FFHSAFSFYE DYLSASFPFG
0301: SYTQVFIPPE IAISSASIGA ALSIFSSQFL FDGKVINKTI DTRIKLAYAL ARQWFGVYIT PEAPNDDWLL DGLAGFLTDM FIKRFLGNNE ARYRRYKANI
0401: AVCRADDSGA TALSAVAASK NLYGTQCIGL FGKIRSWKSV AILQMLEKQM GPESFRKILQ QIVARAQDVN RLLRTLSTKE FRHLANKVGN LERPFLKEFF
0501: PRWVGSCGCP VLKMGFSYNK RKNMVELAIL RECTARFDLG DTMSNGKPDS EKQEGDGWPG MMSIRVHELD GMYDHPILPM TGEPWQLLEF QCHSRLAAKR
0601: FQKTKKSSKP DGSDDNGDTV ANVDMRATSD SPLLWLRADP ELEYLAEIHL NQPVQMWINQ LEKDRDVVAQ AQAIATLEAL PHLSFSVVNA LNNFLGDSKA
0701: FWRNRIEAAF ALAGTASEET DWAGLTHLVA FYKARRFDAN IGLPKPNDFR DFQEYFVLEA IPHAIAMVRA ADQKSPREAV EFVLQLLKYN DNSGNPYSDV
0801: FWLAALVQSI GELEFGQQSI VYLSSLLKRV DRLLQFDRLM PSYNGILTIS CIRSLTQIAL KLSEFVPLDR VIELINPFRT SKTLWKVRVE ASRSLLDLEF
0901: QRNGIDAALA LFIRYLDEEP TLRGQVKLGV HAMRLCQIRN ESDFDSDVKG ETLVALLRLL ESPISFNNVI LRHYLFCILQ VLARRAPTLY GVPKDETLRM
1001: GHAAFCSNLK NIFADLVKQS KPPEFPLENL EDILDDSAIA DALPGNENAK GATISVPDSL FVSEVQKNTE DALLSNEIIN TATGSIPDSL VVTEVQNETD
1101: LLNYRHGVMH LVGDFPLASS ADPFREEPVL PDNEQTKPMV SLLHETGGMS MGPPTTDNLG SRDQGQPAIN LGQDNPGISE PIREPDAVSA SLERKKPVFK
1201: IKVRKTVTSS RAEDNENVTV DKSQDGFRDV DRGASSSVSV DAPQRNVVEL LSSGGNQFPE DVNSCHDVGS HVTASIGSAK VAVEVEELTK ELQCTAESSK
1301: VSLVPQLDGH LLADITRVDD PEAEPHKYAS LHSLTMPNLP VHGKTKEKKK DKGKKRKLEG RKDDPEYLER KRLKKEKKRK EKELAKILKD EAKASTSLES
1401: RRKNEQRGTK AETIRNDHKL SLVEQEDGRK DEAEPRQVVN GAEAKATSSG LSGRNEDIGA KGASLQLKPG GSSGVMLNVD RGDTSLNAAP PTSSHKFKIR
1501: IKNRTLGKS
0101: AAGSVYLSHL DRELLSNLLI MCKKPAEHDI ERQEMHLENG LNSSAENNQN VKKVRIDYWV EKAETGIHFD GDVLHTDSQI RRARCWFPCM DDNLQCCCYD
0201: LEFTVASNLV AVSTGSLLYQ IWTKDVPARK TFVYRLSTPV NARWISLAVA PFEILPDSTI TYLSHICLPA DLTKLRHTVG FFHSAFSFYE DYLSASFPFG
0301: SYTQVFIPPE IAISSASIGA ALSIFSSQFL FDGKVINKTI DTRIKLAYAL ARQWFGVYIT PEAPNDDWLL DGLAGFLTDM FIKRFLGNNE ARYRRYKANI
0401: AVCRADDSGA TALSAVAASK NLYGTQCIGL FGKIRSWKSV AILQMLEKQM GPESFRKILQ QIVARAQDVN RLLRTLSTKE FRHLANKVGN LERPFLKEFF
0501: PRWVGSCGCP VLKMGFSYNK RKNMVELAIL RECTARFDLG DTMSNGKPDS EKQEGDGWPG MMSIRVHELD GMYDHPILPM TGEPWQLLEF QCHSRLAAKR
0601: FQKTKKSSKP DGSDDNGDTV ANVDMRATSD SPLLWLRADP ELEYLAEIHL NQPVQMWINQ LEKDRDVVAQ AQAIATLEAL PHLSFSVVNA LNNFLGDSKA
0701: FWRNRIEAAF ALAGTASEET DWAGLTHLVA FYKARRFDAN IGLPKPNDFR DFQEYFVLEA IPHAIAMVRA ADQKSPREAV EFVLQLLKYN DNSGNPYSDV
0801: FWLAALVQSI GELEFGQQSI VYLSSLLKRV DRLLQFDRLM PSYNGILTIS CIRSLTQIAL KLSEFVPLDR VIELINPFRT SKTLWKVRVE ASRSLLDLEF
0901: QRNGIDAALA LFIRYLDEEP TLRGQVKLGV HAMRLCQIRN ESDFDSDVKG ETLVALLRLL ESPISFNNVI LRHYLFCILQ VLARRAPTLY GVPKDETLRM
1001: GHAAFCSNLK NIFADLVKQS KPPEFPLENL EDILDDSAIA DALPGNENAK GATISVPDSL FVSEVQKNTE DALLSNEIIN TATGSIPDSL VVTEVQNETD
1101: LLNYRHGVMH LVGDFPLASS ADPFREEPVL PDNEQTKPMV SLLHETGGMS MGPPTTDNLG SRDQGQPAIN LGQDNPGISE PIREPDAVSA SLERKKPVFK
1201: IKVRKTVTSS RAEDNENVTV DKSQDGFRDV DRGASSSVSV DAPQRNVVEL LSSGGNQFPE DVNSCHDVGS HVTASIGSAK VAVEVEELTK ELQCTAESSK
1301: VSLVPQLDGH LLADITRVDD PEAEPHKYAS LHSLTMPNLP VHGKTKEKKK DKGKKRKLEG RKDDPEYLER KRLKKEKKRK EKELAKILKD EAKASTSLES
1401: RRKNEQRGTK AETIRNDHKL SLVEQEDGRK DEAEPRQVVN GAEAKATSSG LSGRNEDIGA KGASLQLKPG GSSGVMLNVD RGDTSLNAAP PTSSHKFKIR
1501: IKNRTLGKS
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.