Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | CDX84083 | AT1G32750.1 | 17340043 |
| AT1G73960.1 | CDY44660 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96499 | Canola | nucleus | 97.9 | 97.97 |
| AT1G73960.1 | Thale cress | cytosol | 87.16 | 86.4 |
| Os09t0410125-00 | Rice | extracellular | 12.48 | 53.42 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 17.56 | 50.95 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 8.2 | 48.92 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 47.46 | 48.12 |
| KXG35610 | Sorghum | nucleus | 47.68 | 47.3 |
| KRH03813 | Soybean | nucleus | 46.15 | 45.82 |
| KRH56695 | Soybean | nucleus | 45.94 | 45.61 |
| Zm00001d005736_P003 | Maize | cytosol | 11.9 | 44.69 |
| Zm00001d020432_P001 | Maize | nucleus | 37.23 | 43.07 |
| Solyc03g119780.2.1 | Tomato | nucleus | 45.21 | 41.29 |
| TraesCS5D01G213200.1 | Wheat | nucleus | 38.9 | 37.96 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 38.75 | 37.95 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 38.61 | 37.68 |
| HORVU5Hr1G061200.9 | Barley | nucleus | 38.03 | 37.14 |
| Zm00001d025266_P001 | Maize | cytosol | 8.35 | 35.83 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 24.67 | 35.79 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 5.01 | 35.57 |
| Os09t0410300-01 | Rice | nucleus | 4.35 | 26.79 |
| PGSC0003DMT400014328 | Potato | nucleus | 9.87 | 23.61 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 2.25 | 20.26 |
Protein Annotations
| Gene3D:1.10.390.60 | MapMan:15.3.5.3.3 | GO:A0A078CA43 | InterPro:ARM-type_fold | EnsemblPlants:CDX73029 | ProteinID:CDX73029 |
| ProteinID:CDX73029.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0008237 |
| GO:GO:0008270 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00103471001 | PFAM:PF01433 | PANTHER:PTHR15137 | InterPro:Peptidase_M1_N |
| SUPFAM:SSF48371 | SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 | UniParc:UPI0004EDECCA | SEG:seg |
Description
BnaC06g34770D
Coordinates
chrLK031797:-:1736416..1745254
Molecular Weight (calculated)
154183.0 Da
IEP (calculated)
6.300
GRAVY (calculated)
-0.403
Length
1378 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKARKPKND EAPGAKPSEN SGAKVLHQKL CLSIDFKKRR IYGYTELEVS VPDIGIVGLH AENLVIESVL VDGEPTVFEY YPHYGNPEPE SNWSSVSDPA
0101: SAADAAAMDY FGVLKKEDTA NLLINCCKPS SKDLSEQLDN VALENGSQSS GEAKQNVKLI RINYWIEKTE SGIHFDENIV HTDNQMRRAR CWFPCKDDEY
0201: NRCSFNLEFT VPQNYVAVSV GKLLYQVMSK EDTTQKTYVY ELAIPITPRW VSLVAGPLEV LPDQTNFLIS NLCLPHDLSR LRNTMEFFHE AYSYYEDYLS
0301: AKFPFGFYKQ VFLPPEVVVC SSTLGASLSV FSSHVLYDER VIDQIIDTRI KLASALAKQW FGFYIVPESP NDDWLLDGLA GFLTDMFIKQ FLGNNEARYR
0401: RYKANSAVCK ADDSGAMCLS ASSSCKDLFG THSIGMHGKI RSWKSGAVLQ MLEKQMGSES FRKILQKIIS RAKDPSNAIR SLSTKEFRQF SNKIGNLERP
0501: FLKEFFQRWV ASCGCPVLRI GLSYNKRKNI VEMAALRECT ASLDARLSVG ATDSENRDVD VGWPGIMSIR VYELDGMSDH PKLPMAGDRW QLLELPCHSK
0601: LAAKRYQKPK KGGKPDGADE NVDTVAPLDN KTSIESPLAW IKADPEMEYI AEVHLHQPLQ MWVNQLEKDG DVVGQAQAIA SLEALKQHSF SVVNALNNIL
0701: TDSKVFWRIR IGAAFALAKT ASEENDWAGL QHLIKFYKSR RFDAEIGLPK PNDFRDFPEY FVLEAIPHTI AMVRGADGKS PREAVEFILQ LLKYNDNSGN
0801: PYSDVFWLAV LVQSIGDLEF GQQSLTFLAP LLKRIDRLLQ FDRLMPSYSG VLTISCIRTL AQTALKLSDS ISFEYICKLL EPFRKPDTIL QVRIEASRAL
0901: LDIEYESKGI SSALSLFMKY VVEESSLRGQ VKLCVHTMRL CQIAVGCDSD DCVDTVSLLD LLHLFKSHVV FNNEFLRHHL FCIFQILAGR PPTLFGVPRE
1001: KPLQLVDVEA CIEPQNVFSV PGAEPGEPSL LALENANGKS LDVAPFGVPV RSEEMFMPIA PEMKISEPVA LSLHETEQLE PHMEDQNQPL PENPIVHEIP
1101: SDVEAPTEEL DKRESNLPTN EPQKEPDVVP VAQETKTVIR IKVRPSGATS RAEGSARTVE RSQGIVVRRD IERRQTSSAS VDAPQRISAD AHMEEVNSCH
1201: DVGSRMTASI GSVKLPTEGD TSGKELQCTA ESGKTSTSQK ADNDNQEVAA PSLLPQDNNN MGNEAQQKYG SLQTLSVGKE SEKKKDKEHK KEKKRKREDP
1301: VYLEKKRLKK EKKQKEKEMS KLLTSSSDPA TIKIETIPEA KPEGPSDKPK AEPSAAPAEA RPSTKIRIKL KSKAFNNP
0101: SAADAAAMDY FGVLKKEDTA NLLINCCKPS SKDLSEQLDN VALENGSQSS GEAKQNVKLI RINYWIEKTE SGIHFDENIV HTDNQMRRAR CWFPCKDDEY
0201: NRCSFNLEFT VPQNYVAVSV GKLLYQVMSK EDTTQKTYVY ELAIPITPRW VSLVAGPLEV LPDQTNFLIS NLCLPHDLSR LRNTMEFFHE AYSYYEDYLS
0301: AKFPFGFYKQ VFLPPEVVVC SSTLGASLSV FSSHVLYDER VIDQIIDTRI KLASALAKQW FGFYIVPESP NDDWLLDGLA GFLTDMFIKQ FLGNNEARYR
0401: RYKANSAVCK ADDSGAMCLS ASSSCKDLFG THSIGMHGKI RSWKSGAVLQ MLEKQMGSES FRKILQKIIS RAKDPSNAIR SLSTKEFRQF SNKIGNLERP
0501: FLKEFFQRWV ASCGCPVLRI GLSYNKRKNI VEMAALRECT ASLDARLSVG ATDSENRDVD VGWPGIMSIR VYELDGMSDH PKLPMAGDRW QLLELPCHSK
0601: LAAKRYQKPK KGGKPDGADE NVDTVAPLDN KTSIESPLAW IKADPEMEYI AEVHLHQPLQ MWVNQLEKDG DVVGQAQAIA SLEALKQHSF SVVNALNNIL
0701: TDSKVFWRIR IGAAFALAKT ASEENDWAGL QHLIKFYKSR RFDAEIGLPK PNDFRDFPEY FVLEAIPHTI AMVRGADGKS PREAVEFILQ LLKYNDNSGN
0801: PYSDVFWLAV LVQSIGDLEF GQQSLTFLAP LLKRIDRLLQ FDRLMPSYSG VLTISCIRTL AQTALKLSDS ISFEYICKLL EPFRKPDTIL QVRIEASRAL
0901: LDIEYESKGI SSALSLFMKY VVEESSLRGQ VKLCVHTMRL CQIAVGCDSD DCVDTVSLLD LLHLFKSHVV FNNEFLRHHL FCIFQILAGR PPTLFGVPRE
1001: KPLQLVDVEA CIEPQNVFSV PGAEPGEPSL LALENANGKS LDVAPFGVPV RSEEMFMPIA PEMKISEPVA LSLHETEQLE PHMEDQNQPL PENPIVHEIP
1101: SDVEAPTEEL DKRESNLPTN EPQKEPDVVP VAQETKTVIR IKVRPSGATS RAEGSARTVE RSQGIVVRRD IERRQTSSAS VDAPQRISAD AHMEEVNSCH
1201: DVGSRMTASI GSVKLPTEGD TSGKELQCTA ESGKTSTSQK ADNDNQEVAA PSLLPQDNNN MGNEAQQKYG SLQTLSVGKE SEKKKDKEHK KEKKRKREDP
1301: VYLEKKRLKK EKKQKEKEMS KLLTSSSDPA TIKIETIPEA KPEGPSDKPK AEPSAAPAEA RPSTKIRIKL KSKAFNNP
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.