Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G115120.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73960.1 | HORVU7Hr1G115120.1 | AT1G32750.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G213200.1 | Wheat | nucleus | 96.17 | 96.1 |
| TraesCS5A01G207000.1 | Wheat | nucleus | 95.82 | 96.09 |
| HORVU5Hr1G061180.1 | Barley | mitochondrion | 10.42 | 96.08 |
| TraesCS5B01G205400.1 | Wheat | nucleus | 95.68 | 95.61 |
| HORVU3Hr1G023590.2 | Barley | mitochondrion | 14.6 | 89.18 |
| Os09t0410125-00 | Rice | extracellular | 19.06 | 83.54 |
| KXG35610 | Sorghum | nucleus | 64.07 | 65.08 |
| GSMUA_Achr3P07300_001 | Banana | nucleus | 20.98 | 62.32 |
| Zm00001d020432_P001 | Maize | nucleus | 52.16 | 61.8 |
| Os09t0410300-01 | Rice | nucleus | 8.86 | 55.8 |
| Os09t0409950-01 | Rice | cytosol, mitochondrion, nucleus | 7.51 | 54.64 |
| VIT_17s0000g04200.t01 | Wine grape | nucleus | 51.81 | 53.79 |
| GSMUA_Achr3P07290_001 | Banana | extracellular | 35.51 | 52.74 |
| KRH03813 | Soybean | nucleus | 50.74 | 51.59 |
| KRH56695 | Soybean | nucleus | 50.67 | 51.51 |
| KRH54756 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 4.68 | 50.38 |
| Solyc03g119780.2.1 | Tomato | nucleus | 49.47 | 46.26 |
| CDX73029 | Canola | nucleus | 37.14 | 38.03 |
| CDX96499 | Canola | nucleus | 36.99 | 37.91 |
| AT1G73960.1 | Thale cress | cytosol | 37.28 | 37.84 |
| Bra015951.1-P | Field mustard | nucleus | 36.99 | 37.53 |
Protein Annotations
| Gene3D:1.10.390.60 | MapMan:15.3.5.3.3 | UniProt:A0A287RFQ7 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006508 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008237 | GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0055085 | EnsemblPlantsGene:HORVU5Hr1G061200 | EnsemblPlants:HORVU5Hr1G061200.9 | PFAM:PF01433 | PANTHER:PTHR15137 | InterPro:Peptidase_M1_N |
| SUPFAM:SSF48371 | SUPFAM:SSF55486 | SUPFAM:SSF63737 | InterPro:TAF2 | UniParc:UPI000B471F16 | SEG:seg |
Description
No Description!
Coordinates
chrchr5H:+:479107686..479123446
Molecular Weight (calculated)
157625.0 Da
IEP (calculated)
6.472
GRAVY (calculated)
-0.528
Length
1411 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKARKQKPE GGAGGGPTVL HQKLCLSIDM ENQLIYGYTE MKVLLAENDT FALHADSMTI RNILVDGEAA EFEYSPHWKN VDDQPGWLSV SCLKTAADAA
0101: CSAYVSSLTS ETVPNLIISS ERSVKSTTEL PGDENGEKHE RIGGKPVQFS GDKAVNICNG SVEENDTEEE KENTKEDEKA NEKEVKTEME VETEKEREKK
0201: ETEEEKEKEK EKEKEEKEEE KEKEVINENE KEKENEMQIE NEKVKNTKLV RVDYILEKAE TGVHFVNNVL HSNSQIRRAH CWFPCIDSAT QRCPFDLEFT
0301: VSTDLVAVSN GDLLYQVLSK EDPPRKTYVY KLSTPVSAQW ISLVVGPFEV LPDKNGISVS HMCLSPTLSK LDNTISFFHD AYSCYEDYLA ASFPFGLYKQ
0401: IFLPSEMVVS PTSFGASTCI FSADILNDEK VIDQIIGTRI KLAYALARQW FGIYTSAEEP NDEWLLDGLA GFLTDLFIKR YLGNNEARYR RFKANCTVCQ
0501: FDVSGATALG SPDASTDLYG TQALGSHGKI RSLKAVAVLQ TLEKQMGPDS FRKILQMIVA STRASRTLST KEFRHLANKV GNLERPFLKE FFPRWIESCG
0601: CPIMRLGISY SKRRNLVELA VSRGCTAKAD PGSDNHVNGD IQEGATGWPG MMSVRVHETD GAYDHPILPM AGEALQVVEL QCHSKLAAKR FQKTKKGSKP
0701: DGSDDNVDAS TQENRTSMDS PLLWIRVDPE MEYLAEIHFH QPIQMWINQL EKDKDVISQS QAITVLEKLP QLSFAVINAL NNFLNDTKAF WRVRVEAAYA
0801: LAVTASEDTD LAGLLHLVKF YKSRRFDTDI GLPRPNDFHD IPEYFVLEAI PHAVALVRSS DKSSPRQAIE FILQLLKYND NNGNVYSDAY WLAAMVQAIG
0901: EVEFGQQGIG LLSSLLKRID RLLQFDNFMP GYNGVLTVSC IRALARIAER VSSSICLDRI CELIAPFRSM DKPWKVRIEA SRVLLDLELH HKGLDAALLL
1001: FLKYTDEERS LRGGTKLAVH VLRICQANIE SNLTDQIKVP TLFGLLHLLS SKKAYNNVLL RHNVFCILQI AAGRPPTLYG VPKNVAPSPL VQEISVDQHT
1101: KADSSVPQLS RPQEPSTSTP SVREVLPATV PSKDADNISN CSERRNVVKI RVRRTASSSK GDGADHRDHS HGGRNENEAG PCSSMSVDAP MVGVPNEPPT
1201: TSNHNIEEQN SCHERESRMS ASVSNAKVMD TYEISKELQC TADSRIDAAD SRLLVPKNEF SPVVNVREDV DKPGSQLEGV STSYVGTQAP DSVNGLHSKE
1301: KKRKDKKDKK RSRDEKRDKK DDPEYLAKKR LKKEKKKMEK ELARKQKEGD RASSQQDIVK PSDSQGTVAA TPPAPERSAE PQVSNKDAAV DRTPPPTKKI
1401: KIKFKPLKKI G
0101: CSAYVSSLTS ETVPNLIISS ERSVKSTTEL PGDENGEKHE RIGGKPVQFS GDKAVNICNG SVEENDTEEE KENTKEDEKA NEKEVKTEME VETEKEREKK
0201: ETEEEKEKEK EKEKEEKEEE KEKEVINENE KEKENEMQIE NEKVKNTKLV RVDYILEKAE TGVHFVNNVL HSNSQIRRAH CWFPCIDSAT QRCPFDLEFT
0301: VSTDLVAVSN GDLLYQVLSK EDPPRKTYVY KLSTPVSAQW ISLVVGPFEV LPDKNGISVS HMCLSPTLSK LDNTISFFHD AYSCYEDYLA ASFPFGLYKQ
0401: IFLPSEMVVS PTSFGASTCI FSADILNDEK VIDQIIGTRI KLAYALARQW FGIYTSAEEP NDEWLLDGLA GFLTDLFIKR YLGNNEARYR RFKANCTVCQ
0501: FDVSGATALG SPDASTDLYG TQALGSHGKI RSLKAVAVLQ TLEKQMGPDS FRKILQMIVA STRASRTLST KEFRHLANKV GNLERPFLKE FFPRWIESCG
0601: CPIMRLGISY SKRRNLVELA VSRGCTAKAD PGSDNHVNGD IQEGATGWPG MMSVRVHETD GAYDHPILPM AGEALQVVEL QCHSKLAAKR FQKTKKGSKP
0701: DGSDDNVDAS TQENRTSMDS PLLWIRVDPE MEYLAEIHFH QPIQMWINQL EKDKDVISQS QAITVLEKLP QLSFAVINAL NNFLNDTKAF WRVRVEAAYA
0801: LAVTASEDTD LAGLLHLVKF YKSRRFDTDI GLPRPNDFHD IPEYFVLEAI PHAVALVRSS DKSSPRQAIE FILQLLKYND NNGNVYSDAY WLAAMVQAIG
0901: EVEFGQQGIG LLSSLLKRID RLLQFDNFMP GYNGVLTVSC IRALARIAER VSSSICLDRI CELIAPFRSM DKPWKVRIEA SRVLLDLELH HKGLDAALLL
1001: FLKYTDEERS LRGGTKLAVH VLRICQANIE SNLTDQIKVP TLFGLLHLLS SKKAYNNVLL RHNVFCILQI AAGRPPTLYG VPKNVAPSPL VQEISVDQHT
1101: KADSSVPQLS RPQEPSTSTP SVREVLPATV PSKDADNISN CSERRNVVKI RVRRTASSSK GDGADHRDHS HGGRNENEAG PCSSMSVDAP MVGVPNEPPT
1201: TSNHNIEEQN SCHERESRMS ASVSNAKVMD TYEISKELQC TADSRIDAAD SRLLVPKNEF SPVVNVREDV DKPGSQLEGV STSYVGTQAP DSVNGLHSKE
1301: KKRKDKKDKK RSRDEKRDKK DDPEYLAKKR LKKEKKKMEK ELARKQKEGD RASSQQDIVK PSDSQGTVAA TPPAPERSAE PQVSNKDAAV DRTPPPTKKI
1401: KIKFKPLKKI G
0001: MAKARKPKNE EAPGAKTSEN TGAKVLHQKL FLSIDFKKRQ IYGYTELEVS VPDIGIVGLH AENLGIESVL VDGEPTVFEY YPHHQNSETE SNWNSVSDPA
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
0101: SAADAAAMEY VGVLKREDTA NLLINCCKPS KDLSEQLDSV TLENGSQSSG EAKQNVKLIR INYWVEKIES GIHFDGNIVH TDNQMRRARC WFPCIDDEYH
0201: RCSFDLEFTV PHNFVAVSVG KLLYQVMCKE DTTQKTYVYE LAIPIAPRWV SLVAGPLEIL PDQTNFLISN LCLPHDLSRL RNTMEFFHEA YSYYEDYLSA
0301: NFPFGFYKQV FLPPEMVVTS STSGASLSIF SSHILYDERV IDQTIDTRIK LASALAKQWF GVYITPESPN DDWLLDGLAG FLTDMFIKQF LGNNEARYRR
0401: YKANCAVCKA DDSGAMCLSS SPSCRDLFGT HSIGMHGKIR SWKSGAVLQM LEKQMGSDSF RKILQKIISR AKDPSNSIRS LSTKEFRQFA NKIGNLERPF
0501: LKEFFQRWVA SYGCPVLRIG LSYNKRKNNV EMAALRECTA ALDARLSVIG ATSDSESRDV DAGWPGIMSI RVYELDGMSD HPKLPMAGDR WQLLELPCHS
0601: KLAAKRYQKP KKGGKPDGAE DNVDAIAPLE NKTSIESPLA WIKADPEMEY IAEIHLHQPL QMWVNQLEKD GDVVAQAQAI ASLEALKQHS FSIVNALKNV
0701: LTDSKVFWRI RIAAAFALAK TASEESDWAG LQHLIKFYKS RRFDAEIGLP KPNDFRDFPE YFVLEAIPHA IAIVRGAEGK SPREAVEFIL QLLKYNDNSG
0801: NSYSDVFWLA VLVQSVGDLE FCQQSLTFLA PLLKRIDRLL QFDRLMPSYN GILTISCIRT LAQTALKLSD SISFDHICKL IEPFRNSDTI LQIRIEGSRA
0901: LLDIEYQSKG ISSALLLFMK YLVEESSLRG QVKLCVHTMR LCQIAVGCDS DDCVDTVTLL DLLHLFKSHV VFNNELLRYY LFCIFQILAG RPPTLFGVPK
1001: EKPLQLVDVE ACIEPKNVFL VPGAEAGEPS LSALGDAKGQ SLDVAPYGVP IIPQEMFMPI VPELMLPEPV AAYDETQHLE PRMESQNQPS HENPIVHEIP
1101: SDVEGPTEEL AHREANPPTK EPQKEPDVVS VSVSHEVKKS VIRIKVRPSG ATSRAEGSAR TIERSQGIVV RHDIDRGQTS SASVDAPQRI STDAVSISNQ
1201: NHVEEVNSCH DVGSRMTASI GSVKFASEGD IFGKELQCTA ESGKPSTSQK ADNNNRTVPP SFLPLDHSME NEAQQKYASL QTLSIGKEKE KKKDKEKKEK
1301: KRKREDPVYL EKKRLKKEKK RKEKEMAKLV SSTTDPAKKK IESVAEVKEE EPSDGAMLIK VEPKTEPSTA EARPLPKFRI KLKSKAFNNS
Arabidopsis Description
TAF2Transcription initiation factor TFIID subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.