Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G505400.1 | Wheat | nucleus | 95.35 | 95.35 |
| TraesCS7A01G515000.1 | Wheat | plastid | 92.57 | 91.53 |
| TraesCS7B01G431500.1 | Wheat | nucleus | 83.43 | 81.85 |
| Os06t0645700-01 | Rice | cytosol, nucleus | 3.12 | 77.46 |
| Os06t0645800-01 | Rice | nucleus | 35.24 | 70.57 |
| EER90111 | Sorghum | nucleus | 71.4 | 69.73 |
| Zm00001d046579_P019 | Maize | nucleus | 70.03 | 68.29 |
| Os06t0645901-00 | Rice | cytosol, nucleus | 12.66 | 65.78 |
| CDY22837 | Canola | cytosol | 2.72 | 64.0 |
| GSMUA_Achr2P11610_001 | Banana | nucleus | 53.41 | 51.34 |
| CDY49818 | Canola | nucleus | 2.95 | 46.43 |
| Solyc07g006820.2.1 | Tomato | nucleus | 47.45 | 45.86 |
| VIT_12s0028g03940.t01 | Wine grape | nucleus | 49.21 | 45.32 |
| Bra018905.1-P | Field mustard | nucleus | 3.8 | 44.97 |
| KRH62676 | Soybean | nucleus | 47.62 | 44.41 |
| KRH39697 | Soybean | nucleus | 47.28 | 44.07 |
| AT1G32750.1 | Thale cress | nucleus | 44.61 | 40.96 |
| AT3G19040.2 | Thale cress | nucleus | 37.91 | 37.28 |
Protein Annotations
| Gene3D:1.20.920.10 | MapMan:15.3.4.4.4 | MapMan:15.3.5.3.2 | MapMan:18.4.7.3 | Gene3D:3.10.20.90 | InterPro:Bromodomain |
| InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:IPR001487 | InterPro:IPR036427 | PFAM:PF00240 | PFAM:PF00439 | PFAM:PF09247 |
| PFAM:PF12157 | PRINTS:PR00503 | ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS50053 | PANTHER:PTHR13900 |
| SMART:SM00213 | SMART:SM00297 | SUPFAM:SSF47055 | SUPFAM:SSF47370 | SUPFAM:SSF54236 | InterPro:TAFII-230_TBP-bd_sf |
| InterPro:TAF_II_230-bd | InterPro:TFIID_sub1_DUF3591 | EnsemblPlantsGene:TraesCS7B01G431700 | EnsemblPlants:TraesCS7B01G431700.2 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
| TIGR:cd01769 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:699909902..699923485
Molecular Weight (calculated)
198382.0 Da
IEP (calculated)
5.182
GRAVY (calculated)
-0.724
Length
1762 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDGERDEDD VATTSAADDD DDDDYEEPGG GNRLLGFMFG NVDDAGDLDA DYLDEDAKDH LFALADKLGP SLKDIDLTKS SSVPDDPYEQ DYDEKAEDAI
0101: DYEDIDEQYD GPEVEAATEE DHLLSKKDYL SSNTMFASVC SEVSVFDEEN YDEDEEPPND MELPGDYFIQ AEQLGISPSN DNPAIEMVSS SLPQLEESMD
0201: VEYEVCQQEE IDIEEDQLES KSATSLPVLC IEHGSAILKF SEVFGVQEPV RKAKTDHHKR PVSKDVRITN ISDIVEDDEE VFLRCAIQDV SSLKHIKMNE
0301: DLVESDSDEL ISSDTFGFKD SCLSEQPMKE AHKDFPTAQQ APVCPDVYPL EHEDWENGII WGNSPASESR PCLKSCVISE ESSDTHSEDE AKDYGYVSRY
0401: CDVQSRNNGS PEPFGFTEMP ASASCHSPEN SYPPLTKETR LEKNDLDHAE PNNINGAVKI ATMKCLSNLS LLNKELLEGS WLDNIIWDHS EDAPKPKLIM
0501: DLKDDQMLFE ILDEENGNHL RSHAFAMIVS RSVRTSTVEN FGHKNQIITF DGQFNISNDK FYSNKEISQQ AKSHTKKRSS MGVKVVHSVP ALKLQTMKLN
0601: LSINEIANFH RPKAKWYPHE NKLAVELQGV ACSHGSMTVI VLTLGGKGVK LLVNAEETPL SVKSKASKKL EFRPSEKIKL FGSGKELEDD ISLAMQNVRP
0701: NSILHVVRTE VHLWPKAQRL PGKDKALRPP GAFRKRSDLS VKDGHVFLME YCEERPLLLA NAGMGARLCT YYQKTSPDDQ TATSLRSNNH GLGTVLAIEP
0801: AGKSPFLGDV RSGSHQSCLE TNMYRAPAFP HKVASTDYLL VRSPKGMLSL RRIDKLYAVG QQEPHMEVFS PRPKNLQNYL LNRILVYVYR EFRVRERPGV
0901: LSQIRADEIP IEHPLTDVIM RKGLKHCADL EKRPNGHLFW TQRADFRIPS EDELRRMLSP ESVCCHESMQ AAQHRLKHLG IHKLTQPVGL ASAMDQLPDK
1001: AIELAAAAHI ERELQITSWS LTSNFVACMN QDRENIERLE ISGIGDPSGR GLGFSYVRVN PVSNLPHKKK PAAAKGTTVT GTDADLRRLS MDAARELLLK
1101: FGVPDEQIDK LTRWHRIAMV RKLSSEQAAS GIMIDEIPVS KFAREQRMSF LQLHHQAKEK CQEVWDRQFQ SLSAIDDDDN GSDTEANSDF DSFAGDLENL
1201: LDAEEFDNED VGNADLRSDK GNDMEGLKMR KFSTRVQFNE EDDQAEAALV KKLLEESGND IKGKKQPVEM TNYGTSMYNQ GANKTKPRQS ALTLEESTPR
1301: VVKEEKRQGA KGDQQTLCLV CGACGKLGHM RTNKLCPKYG QDPETSGLDV ISYRSNPLDE ASHVQTTKPP GRRLVAKVSS EVPETEGPDC IEKIKPVRFR
1401: CGAPEKSLER NMSVAGSLVS DKLTMDANDL RSTGNVSKIK ICSKTKSEDY PPDTPKPSIV IRLCAKAEKD VPRKKVIFKQ PEGHVGQLTA IENRSGQEPR
1501: KLRKISELPS FKENIRENDG WYAGEPCQMN SSQDRLGLDG NRKSKVVGSD ESWSAFKEQR VMQEQRLIQA RMQEVSREEE LQKSKRKNKK KKRHEFRDDD
1601: VLDHRPYRND RRVPERDRAT KRRTPADMAE NAPSAKRRRG GEVELSNILD KIVDHLRNQT SISLLFLKPV TKKVAPDYYD VIQRPMDLGT IRDKARKMEY
1701: RNREEFRHDV AQIATNAHIY NDTRHPHIPP LADQLLKICN RLLEESADAL NDAESAIEGL AQ
0101: DYEDIDEQYD GPEVEAATEE DHLLSKKDYL SSNTMFASVC SEVSVFDEEN YDEDEEPPND MELPGDYFIQ AEQLGISPSN DNPAIEMVSS SLPQLEESMD
0201: VEYEVCQQEE IDIEEDQLES KSATSLPVLC IEHGSAILKF SEVFGVQEPV RKAKTDHHKR PVSKDVRITN ISDIVEDDEE VFLRCAIQDV SSLKHIKMNE
0301: DLVESDSDEL ISSDTFGFKD SCLSEQPMKE AHKDFPTAQQ APVCPDVYPL EHEDWENGII WGNSPASESR PCLKSCVISE ESSDTHSEDE AKDYGYVSRY
0401: CDVQSRNNGS PEPFGFTEMP ASASCHSPEN SYPPLTKETR LEKNDLDHAE PNNINGAVKI ATMKCLSNLS LLNKELLEGS WLDNIIWDHS EDAPKPKLIM
0501: DLKDDQMLFE ILDEENGNHL RSHAFAMIVS RSVRTSTVEN FGHKNQIITF DGQFNISNDK FYSNKEISQQ AKSHTKKRSS MGVKVVHSVP ALKLQTMKLN
0601: LSINEIANFH RPKAKWYPHE NKLAVELQGV ACSHGSMTVI VLTLGGKGVK LLVNAEETPL SVKSKASKKL EFRPSEKIKL FGSGKELEDD ISLAMQNVRP
0701: NSILHVVRTE VHLWPKAQRL PGKDKALRPP GAFRKRSDLS VKDGHVFLME YCEERPLLLA NAGMGARLCT YYQKTSPDDQ TATSLRSNNH GLGTVLAIEP
0801: AGKSPFLGDV RSGSHQSCLE TNMYRAPAFP HKVASTDYLL VRSPKGMLSL RRIDKLYAVG QQEPHMEVFS PRPKNLQNYL LNRILVYVYR EFRVRERPGV
0901: LSQIRADEIP IEHPLTDVIM RKGLKHCADL EKRPNGHLFW TQRADFRIPS EDELRRMLSP ESVCCHESMQ AAQHRLKHLG IHKLTQPVGL ASAMDQLPDK
1001: AIELAAAAHI ERELQITSWS LTSNFVACMN QDRENIERLE ISGIGDPSGR GLGFSYVRVN PVSNLPHKKK PAAAKGTTVT GTDADLRRLS MDAARELLLK
1101: FGVPDEQIDK LTRWHRIAMV RKLSSEQAAS GIMIDEIPVS KFAREQRMSF LQLHHQAKEK CQEVWDRQFQ SLSAIDDDDN GSDTEANSDF DSFAGDLENL
1201: LDAEEFDNED VGNADLRSDK GNDMEGLKMR KFSTRVQFNE EDDQAEAALV KKLLEESGND IKGKKQPVEM TNYGTSMYNQ GANKTKPRQS ALTLEESTPR
1301: VVKEEKRQGA KGDQQTLCLV CGACGKLGHM RTNKLCPKYG QDPETSGLDV ISYRSNPLDE ASHVQTTKPP GRRLVAKVSS EVPETEGPDC IEKIKPVRFR
1401: CGAPEKSLER NMSVAGSLVS DKLTMDANDL RSTGNVSKIK ICSKTKSEDY PPDTPKPSIV IRLCAKAEKD VPRKKVIFKQ PEGHVGQLTA IENRSGQEPR
1501: KLRKISELPS FKENIRENDG WYAGEPCQMN SSQDRLGLDG NRKSKVVGSD ESWSAFKEQR VMQEQRLIQA RMQEVSREEE LQKSKRKNKK KKRHEFRDDD
1601: VLDHRPYRND RRVPERDRAT KRRTPADMAE NAPSAKRRRG GEVELSNILD KIVDHLRNQT SISLLFLKPV TKKVAPDYYD VIQRPMDLGT IRDKARKMEY
1701: RNREEFRHDV AQIATNAHIY NDTRHPHIPP LADQLLKICN RLLEESADAL NDAESAIEGL AQ
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.