Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G371300.1 | Wheat | nucleus, plastid | 91.77 | 90.61 |
| HORVU3Hr1G084430.4 | Barley | plastid | 85.01 | 85.32 |
| TraesCS3B01G403500.1 | Wheat | nucleus | 84.28 | 84.28 |
| EES03919 | Sorghum | nucleus, plastid | 55.94 | 61.45 |
| Os01t0858500-01 | Rice | plastid | 33.64 | 61.13 |
| Zm00001d042792_P002 | Maize | nucleus, plastid | 47.53 | 52.85 |
| VIT_08s0007g03700.t01 | Wine grape | nucleus | 27.61 | 40.59 |
| GSMUA_Achr10P... | Banana | plastid | 24.31 | 37.36 |
| KRH30849 | Soybean | nucleus, plastid | 31.81 | 34.32 |
| CDY00904 | Canola | nucleus, plastid | 32.18 | 33.4 |
| KRH32724 | Soybean | nucleus, plastid | 30.71 | 33.14 |
| CDY60164 | Canola | nucleus, plastid | 31.81 | 33.02 |
| Bra029816.1-P | Field mustard | nucleus, plastid | 31.81 | 33.02 |
| AT3G10070.1 | Thale cress | nucleus, plastid | 32.18 | 32.65 |
| PGSC0003DMT400023148 | Potato | nucleus, plastid | 31.08 | 30.3 |
| Bra034092.1-P | Field mustard | plastid | 14.63 | 29.74 |
| Solyc09g009680.2.1 | Tomato | nucleus, plastid | 30.71 | 29.68 |
| CDY22214 | Canola | plastid | 17.92 | 28.74 |
| CDY41320 | Canola | plastid | 18.1 | 28.7 |
| TraesCS6D01G151600.1 | Wheat | nucleus, plastid | 18.65 | 24.4 |
| TraesCS3D01G356600.1 | Wheat | nucleus, plastid | 23.95 | 24.17 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.5 | MapMan:15.3.5.3.12 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PD012998 | PFAM:PF03847 |
| SUPFAM:SSF47113 | InterPro:TFIID_TAF12_dom | EnsemblPlantsGene:TraesCS3D01G364400 | EnsemblPlants:TraesCS3D01G364400.1 | TIGR:cd07981 | SEG:seg |
Description
No Description!
Coordinates
chr3D:-:478132358..478136814
Molecular Weight (calculated)
57803.9 Da
IEP (calculated)
10.493
GRAVY (calculated)
-0.809
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPPPTQPD AAAPPPSTAA AAPPAAPPPD LAPPVSTAAP PTSEPTPAPA PAPAPAPAPA PXXXPPTPIP ATARPPAPRM RPPYTHLASP ITMSSSSSAA
101: TAGASSAASA MARGGVAIGL PAHPRGAQTP MGYTGFVPPP PLAHQFSPMH RGPDQAPLPT PQLRQPAPGI QNIGMIGSLN ASQMRPGAVS GSQQPRPGLP
201: SSATPSSSGS QMPGSQKTPM HSLTRPMSMG SPATALQQTP ANMSSPFRPQ QRPQVPQQRP QVPQPRPQVP QPRPYHAAQS APVTSQQNAL SGQQQLPQQQ
301: PQHQHQQQQQ QVLQQQQQQQ QQVLQQQQQQ QVLQQQQQQQ QQQQQQQQQQ QQSQPQSSSQ QNQQNTTLKN QQQAARTPVS LTQKPDSPAT LQATNMQLVD
401: MASADAASGE SSNRLLSKRS IHDLLAQIDP SERLDPDVED VLIDIAEDFI ESVGTFACSL AKHRKSTTLE AKDVLLHAER SWNITLPGFT GDEIKLYKKP
501: HVNDIHRERL TLIKKSMASE GNIKTSAAQS TANQKNQAPK PPATGSP
101: TAGASSAASA MARGGVAIGL PAHPRGAQTP MGYTGFVPPP PLAHQFSPMH RGPDQAPLPT PQLRQPAPGI QNIGMIGSLN ASQMRPGAVS GSQQPRPGLP
201: SSATPSSSGS QMPGSQKTPM HSLTRPMSMG SPATALQQTP ANMSSPFRPQ QRPQVPQQRP QVPQPRPQVP QPRPYHAAQS APVTSQQNAL SGQQQLPQQQ
301: PQHQHQQQQQ QVLQQQQQQQ QQVLQQQQQQ QVLQQQQQQQ QQQQQQQQQQ QQSQPQSSSQ QNQQNTTLKN QQQAARTPVS LTQKPDSPAT LQATNMQLVD
401: MASADAASGE SSNRLLSKRS IHDLLAQIDP SERLDPDVED VLIDIAEDFI ESVGTFACSL AKHRKSTTLE AKDVLLHAER SWNITLPGFT GDEIKLYKKP
501: HVNDIHRERL TLIKKSMASE GNIKTSAAQS TANQKNQAPK PPATGSP
001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH
Arabidopsis Description
TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.