Factsheet for TraesCS3D01G382200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G371300.1
TraesCS3B01G403500.1
TraesCS3D01G364400.1
TraesCS5B01G318400.1
TraesCS5D01G324200.2
TraesCS7A01G467500.1
TraesCS7B01G416400.1
TraesCS7D01G496500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	TraesCS3A01G371300.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3B01G403500.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3D01G364400.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS5B01G318400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS5D01G324200.2	AT5G25150.1	17340043
AT1G54140.1	TraesCS7A01G467500.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7B01G416400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7D01G496500.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	95.1	88.18
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	92.65	85.91
TraesCS3A01G387000.1	Wheat	nucleus	75.49	84.62
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	90.2	84.02
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	91.18	82.3
TraesCS3A01G386900.1	Wheat	nucleus	57.35	81.25
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	72.06	81.22
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	83.82	79.53
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	82.84	75.45
EER94702	Sorghum	cytosol, nucleus, plastid	77.45	69.3
Zm00001d029473_P001	Maize	plastid	75.98	68.89
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	72.55	66.07
GSMUA_Achr7P11400_001	Banana	cytosol	51.47	66.04
Zm00001d047265_P001	Maize	plastid	75.49	61.6
Solyc04g010090.2.1	Tomato	nucleus	46.57	59.01
VIT_09s0002g01160.t01	Wine grape	cytosol	50.0	57.63
Bra030901.1-P	Field mustard	nucleus	50.0	56.98
CDY02479	Canola	nucleus	50.0	56.98
PGSC0003DMT400029923	Potato	nucleus	50.49	56.28
CDY56625	Canola	nucleus	49.02	55.87
AT1G54140.1	Thale cress	nucleus	50.0	55.74
CDY26139	Canola	cytosol, nucleus, plastid	40.69	53.21
KRH02410	Soybean	cytosol	46.08	53.11
KRH50675	Soybean	cytosol	45.1	52.87
KRH73515	Soybean	cytosol	43.14	48.89
CDY33086	Canola	plastid	25.0	43.97
GSMUA_Achr10P...	Banana	cytosol	45.59	23.43

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6
SUPFAM:SSF47113	InterPro:TFIID-31	EnsemblPlantsGene:TraesCS3D01G382200	EnsemblPlants:TraesCS3D01G382200.1	TIGR:cd07979	SEG:seg

Description

No Description!

Coordinates

chr3D:-:497906132..497908991

Molecular Weight (calculated)

22194.8 Da

IEP (calculated)

4.780

GRAVY (calculated)

-0.717

Length

204 amino acids

Sequence
(BLAST)

001: MYSGGVRPSL PSAAAGGASG PDEPRDARVV RELLRSMGLG EGEYEPRVLH QFLDLAYRYV GDVLGDAQVY ADHAAKPQLD ADDIRLAIQA KVNFSFSQPP
101: PREAMNKIRL PKSIAPPGSI PLPPEQDTLL SENYQLLPAL KPPTQTEEAE DDNERADAIP ANPSSNYSQD QRGSEQHQPQ SQSQRVSFQL NAVAAAAAKR
201: PRDN

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.