Factsheet for Solyc04g010090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065700.2.1
Solyc09g009680.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT1G54140.1	Solyc06g065700.2.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029923	Potato	nucleus	88.2	77.6
VIT_09s0002g01160.t01	Wine grape	cytosol	78.26	71.19
GSMUA_Achr7P11400_001	Banana	cytosol	67.08	67.92
Bra030901.1-P	Field mustard	nucleus	69.57	62.57
CDY02479	Canola	nucleus	69.57	62.57
CDY56625	Canola	nucleus	69.57	62.57
AT1G54140.1	Thale cress	nucleus	70.81	62.3
KRH50675	Soybean	cytosol	67.08	62.07
KRH02410	Soybean	cytosol	67.7	61.58
CDY26139	Canola	cytosol, nucleus, plastid	59.63	61.54
KRH73515	Soybean	cytosol	63.35	56.67
TraesCS3B01G445300.1	Wheat	nucleus	62.11	55.56
TraesCS3A01G387000.1	Wheat	nucleus	62.73	55.49
TraesCS3A01G386900.1	Wheat	nucleus	47.83	53.47
TraesCS3A01G386800.1	Wheat	cytosol	59.63	51.61
CDY33086	Canola	plastid	35.4	49.14
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	49.07	49.07
HORVU3Hr1G100530.1	Barley	cytosol	63.35	48.57
TraesCS3A01G387200.1	Wheat	nucleus	34.78	47.46
TraesCS3D01G382200.1	Wheat	nucleus	59.01	46.57
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	63.35	46.36
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	62.73	46.12
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	62.73	45.91
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	62.11	45.66
HORVU3Hr1G081440.3	Barley	cytosol	32.3	45.61
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	60.25	45.12
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	62.73	45.09
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	62.73	44.69
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	61.49	44.2
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	61.49	44.0
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	60.25	43.3
Zm00001d029473_P001	Maize	plastid	59.63	42.67
EER94702	Sorghum	cytosol, nucleus, plastid	60.25	42.54
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	47.2	41.99
HORVU3Hr1G091670.2	Barley	cytosol, mitochondrion, nucleus	27.33	39.64
Zm00001d047265_P001	Maize	plastid	60.25	38.8
Zm00001d007933_P001	Maize	plastid	37.89	36.09
HORVU2Hr1G031760.1	Barley	cytosol, nucleus	18.63	31.25
GSMUA_Achr10P...	Banana	cytosol	59.63	24.18
HORVU3Hr1G081540.4	Barley	plastid	34.78	23.05
Zm00001d008371_P001	Maize	cytosol	35.4	22.8
Os07t0612500-00	Rice	nucleus	31.06	11.76

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	GO:GO:0000124	GO:GO:0001075	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006366	GO:GO:0006464	GO:GO:0008134
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0019538	GO:GO:0043966	GO:GO:0044212	GO:GO:0045944	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4BPG4	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6
SUPFAM:SSF47113	EnsemblPlantsGene:Solyc04g010090.2	EnsemblPlants:Solyc04g010090.2.1	InterPro:TFIID-31	UniParc:UPI0002765E07	SEG:seg

Description

No Description!

Coordinates

chr4:+:3391686..3396958

Molecular Weight (calculated)

18011.1 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.761

Length

161 amino acids

Sequence
(BLAST)

001: MGVDDYEPRV VHQFLELWYR YVVDVLTDAQ VYSEHAGKAS IDSDDIKLAI QSKVNFSFSQ PPPREVLLEL ARNRNKIPLP KSIAGSGVPL PPEQDTLINP
101: NYQLAIAKKQ TNQPEETEED EESADPNPAP SKNPTLSHEK TDLPQGTPQR VSFPLGAKRP R

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.