Factsheet for VIT_09s0002g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05780.t01
VIT_08s0007g03700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	VIT_08s0007g03700.t01	AT3G10070.1	17340043
AT1G54140.1	VIT_04s0008g05780.t01	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g010090.2.1	Tomato	nucleus	71.19	78.26
PGSC0003DMT400029923	Potato	nucleus	80.23	77.6
AT1G54140.1	Thale cress	nucleus	79.1	76.5
Bra030901.1-P	Field mustard	nucleus	76.84	75.98
CDY02479	Canola	nucleus	76.84	75.98
CDY56625	Canola	nucleus	75.71	74.86
KRH50675	Soybean	cytosol	72.88	74.14
KRH02410	Soybean	cytosol	74.01	74.01
CDY26139	Canola	cytosol, nucleus, plastid	64.97	73.72
GSMUA_Achr7P11400_001	Banana	cytosol	64.41	71.7
KRH73515	Soybean	cytosol	66.1	65.0
TraesCS3A01G387000.1	Wheat	nucleus	57.06	55.49
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	50.28	55.28
TraesCS3B01G445300.1	Wheat	nucleus	55.93	55.0
TraesCS3A01G386900.1	Wheat	nucleus	43.5	53.47
CDY33086	Canola	plastid	35.03	53.45
TraesCS3A01G386800.1	Wheat	cytosol	54.8	52.15
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	62.15	50.23
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	62.15	50.0
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	62.15	50.0
TraesCS3D01G382200.1	Wheat	nucleus	57.63	50.0
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	63.28	50.0
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	63.28	50.0
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	61.58	49.77
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	62.71	49.33
HORVU3Hr1G081440.3	Barley	cytosol	31.64	49.12
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	62.71	49.12
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	59.32	48.84
HORVU3Hr1G100530.1	Barley	cytosol	57.63	48.57
TraesCS3A01G387200.1	Wheat	nucleus	32.2	48.31
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	61.02	48.21
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	48.59	47.51
EER94702	Sorghum	cytosol, nucleus, plastid	61.02	47.37
Zm00001d029473_P001	Maize	plastid	59.89	47.11
HORVU3Hr1G091670.2	Barley	cytosol, mitochondrion, nucleus	28.81	45.95
Zm00001d047265_P001	Maize	plastid	59.89	42.4
Zm00001d007933_P001	Maize	plastid	37.29	39.05
HORVU2Hr1G031760.1	Barley	cytosol, nucleus	20.9	38.54
GSMUA_Achr10P...	Banana	cytosol	57.63	25.69
HORVU3Hr1G081540.4	Barley	plastid	32.2	23.46
Zm00001d008371_P001	Maize	cytosol	31.07	22.0
Os07t0612500-00	Rice	nucleus	32.77	13.65

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100248023	wikigene:100248023	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	ProteinID:CBI35866
ProteinID:CBI35866.3	UniProt:D7TZS0	EMBL:FN596494	GO:GO:0000124	GO:GO:0001075	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006366	GO:GO:0006464	GO:GO:0008134
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0019538	GO:GO:0043966	GO:GO:0044212	GO:GO:0045944	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100248023	wikigene:LOC100248023	PFAM:PF02291	PANTHER:PTHR12595
PANTHER:PTHR12595:SF6	SUPFAM:SSF47113	TIGR:TC55723	InterPro:TFIID-31	UniParc:UPI00015C8573	ArrayExpress:VIT_09s0002g01160
EnsemblPlantsGene:VIT_09s0002g01160	EnsemblPlants:VIT_09s0002g01160.t01	unigene:Vvi.1774	RefSeq:XP_002273931	RefSeq:XP_002273931.1	RefSeq:XP_010654428.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:894783..897452

Molecular Weight (calculated)

19821.4 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.631

Length

177 amino acids

Sequence
(BLAST)

001: MAEGDEDLPR DAKIVKSLLK SMGVDDYEPR VIHQFLELWY RYVVDVLTDA QVYSEHASKP AIDCDDVKLA IQSKVNFSFS QPPAREVLLE LARNRNKIPL
101: PKSIAGPGIP LPPEQDTLIS PNYQLAIPKK RTAQAVEETE EDEEGADPSH ASQEGRTDLP QHTPQRVSFP IGAKRPR

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.