CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03919
KXG20501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	EES03919	AT3G10070.1	17340043
AT1G54140.1	KXG20501	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029473_P001	Maize	plastid	95.18	96.44
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	60.09	85.09
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	78.51	81.36
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	78.07	81.28
TraesCS3B01G445300.1	Wheat	nucleus	63.6	80.56
TraesCS3A01G387000.1	Wheat	nucleus	64.04	80.22
Zm00001d047265_P001	Maize	plastid	87.72	80.0
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	77.19	80.0
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	76.75	79.91
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	78.51	79.56
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	78.07	79.46
TraesCS3A01G386900.1	Wheat	nucleus	50.0	79.17
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	77.63	79.02
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	62.72	79.01
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	77.19	78.57
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	77.63	78.32
TraesCS3D01G382200.1	Wheat	nucleus	69.3	77.45
TraesCS3A01G386800.1	Wheat	cytosol	62.72	76.88
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	72.37	76.74
HORVU3Hr1G100530.1	Barley	cytosol	70.18	76.19
GSMUA_Achr7P11400_001	Banana	cytosol	51.32	73.58
TraesCS3A01G387200.1	Wheat	nucleus	35.96	69.49
CDY26139	Canola	cytosol, nucleus, plastid	42.11	61.54
CDY56625	Canola	nucleus	48.25	61.45
VIT_09s0002g01160.t01	Wine grape	cytosol	47.37	61.02
CDY02479	Canola	nucleus	47.81	60.89
Bra030901.1-P	Field mustard	nucleus	47.81	60.89
Solyc04g010090.2.1	Tomato	nucleus	42.54	60.25
PGSC0003DMT400029923	Potato	nucleus	47.81	59.56
AT1G54140.1	Thale cress	nucleus	47.37	59.02
KRH50675	Soybean	cytosol	44.3	58.05
KRH02410	Soybean	cytosol	44.74	57.63
KRH73515	Soybean	cytosol	41.67	52.78
CDY33086	Canola	plastid	25.0	49.14
HORVU3Hr1G081540.4	Barley	plastid	41.23	38.68
GSMUA_Achr10P...	Banana	cytosol	45.61	26.2

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	EntrezGene:8080424	UniProt:C5WWP0	EnsemblPlants:EER94702
ProteinID:EER94702	ProteinID:EER94702.1	GO:GO:0000124	GO:GO:0001075	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006366	GO:GO:0006464	GO:GO:0008134	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0043966	GO:GO:0044212	GO:GO:0045944	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6	EnsemblPlantsGene:SORBI_3001G341500	SUPFAM:SSF47113
InterPro:TFIID-31	UniParc:UPI0001A83213	RefSeq:XP_002467704.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:62870030..62876258

Molecular Weight (calculated)

24575.6 Da

IEP (calculated)

4.694

GRAVY (calculated)

-0.596

Length

228 amino acids

Sequence
(BLAST)

001: MDAGGARPSA PSAAAAAGTA VAGASAADEP RDARVVRELL RSMGLGEGEY EPRVVHQFLD LAYRYVGDVL GDAQVYADHA GKAQIDADDV SLAIQAKVNF
101: SFSQPPPREV LLELARSRNR IPLPKSIAPP GSIPLPPEQD TLLAQNYQLL PPLKPPPQYE ETEDENEESN PSLTPNPANS NPTFSQDQRN NEQQHTPQHG
201: QRVSFQLNAV AAAAAKRPRM TIDQLNMG

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.