CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90111
EER94702
EES00711
EES01269
EES15849
EES17247
KXG20501
KXG31790
KXG33694
OQU92338

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	EES00711	AT1G02680.1	17340043
AT3G10070.1	KXG33694	AT1G17440.1	17340043
AT3G10070.1	KXG31790	AT1G27720.1	17340043
AT3G10070.1	OQU92338	AT1G27720.1	17340043
AT3G10070.1	EER90111	AT1G32750.1	17340043
AT3G10070.1	EER94702	AT1G54140.1	17340043
AT3G10070.1	EES01269	AT4G20280.1	17340043
AT3G10070.1	EES15849	AT4G34340.1	17340043
AT3G10070.1	EES17247	AT4G34340.1	17340043
AT3G10070.1	KXG20501	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042792_P002	Maize	nucleus, plastid	70.28	71.14
Os01t0858500-01	Rice	plastid	34.14	56.48
TraesCS3D01G364400.1	Wheat	cytosol, plastid	61.45	55.94
TraesCS3B01G403500.1	Wheat	nucleus	60.04	54.66
HORVU3Hr1G084430.4	Barley	plastid	59.64	54.5
TraesCS3A01G371300.1	Wheat	nucleus, plastid	59.64	53.61
VIT_08s0007g03700.t01	Wine grape	nucleus	27.51	36.83
GSMUA_Achr10P...	Banana	plastid	25.7	35.96
KRH30849	Soybean	nucleus, plastid	33.13	32.54
KRH32724	Soybean	nucleus, plastid	31.33	30.77
AT3G10070.1	Thale cress	nucleus, plastid	33.13	30.61
PGSC0003DMT400023148	Potato	nucleus, plastid	34.34	30.48
Solyc09g009680.2.1	Tomato	nucleus, plastid	34.54	30.39
CDY60164	Canola	nucleus, plastid	32.13	30.36
Bra029816.1-P	Field mustard	nucleus, plastid	32.13	30.36
CDY00904	Canola	nucleus, plastid	31.53	29.79
Bra034092.1-P	Field mustard	plastid	15.26	28.25
CDY22214	Canola	plastid	17.67	25.81
CDY41320	Canola	plastid	17.27	24.93
KXG33694	Sorghum	nucleus, plastid	25.1	22.56

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EntrezGene:8058943	UniProt:C5XQH8	EnsemblPlants:EES03919
ProteinID:EES03919	ProteinID:EES03919.1	GO:GO:0000124	GO:GO:0001102	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695
GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998	PFAM:PF03847
PANTHER:PTHR12264	PANTHER:PTHR12264:SF21	EnsemblPlantsGene:SORBI_3003G362900	SUPFAM:SSF47113	unigene:Sbi.20827	InterPro:TAF12
InterPro:TFIID_TAF12_dom	UniParc:UPI0001A85263	RefSeq:XP_002458799.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:68028967..68034450

Molecular Weight (calculated)

51784.6 Da

IEP (calculated)

10.463

GRAVY (calculated)

-0.624

Length

498 amino acids

Sequence
(BLAST)

001: MDAPPPSQPD AAAAPPSSTT ASAPSPAPPS NPPTSTAAAA APASDSAITT SNPNPATAAN PTQTLEAPGP VPAAARPPPP RMRPPYTHLA APITMSSSSS
101: GAATAAASSA SVPAASSAAP PVPRGGVVLG VPAPRPAQTP AGYTGFVPPP PLAHQFGLMH RGPDQPPPSS SQFRQPSPGI QNIGMAGSIN TSQMRPGAIS
201: GPQQPRPGLP SSTTTIPSGS QMPGSQRAPS QSLMRPMTVS SPSPLPASQQ TPQSSSSTFR PQQRPQISQP RPQQSAPVTP PQQNIILTQQ QQQQQQQHQK
301: QQQQSSSHQN QQSTAPKNQP QLSQQPAART PISMTPKPDS PAVPNVAVLQ SVDAAATDAN GSETGARLIT KRSIHELVAQ IDPNEKLDPE VEDVLIDIAE
401: DFVESVTTFA CSLAKHRKSS TLEAKDVLLH AERSWNITLP GFSGDEIKLY KKQHINDIHR ERLALIKKSM ATDTRISAAQ AAANQKNQTP KPPAPASP

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.