CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01269
EES03919
EES15849
EES17247
KXG27287
KXG33694

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	KXG33694	AT1G17440.1	17340043
AT1G02680.1	KXG27287	AT1G71230.1	21798944
AT1G02680.1	EES03919	AT3G10070.1	17340043
AT1G02680.1	EES01269	AT4G20280.1	17340043
AT1G02680.1	EES15849	AT4G34340.1	17340043
AT1G02680.1	EES17247	AT4G34340.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040759_P002	Maize	cytosol	12.83	100.0
Zm00001d040757_P002	Maize	plastid	95.72	96.76
Os01t0338100-00	Rice	plastid	70.59	80.98
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	51.34	74.42
Solyc02g078300.2.1	Tomato	nucleus	47.59	69.53
PGSC0003DMT400076353	Potato	nucleus	47.59	69.53
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	50.8	65.07
KRH31641	Soybean	nucleus, plastid	36.36	64.76
AT1G02680.1	Thale cress	plastid	42.25	62.7
CDY15437	Canola	plastid	42.78	62.5
KRH31624	Soybean	nucleus, plastid	45.45	62.5
KRH31820	Soybean	nucleus, plastid	45.45	62.5
Bra030508.1-P	Field mustard	plastid	42.25	61.72
Bra033338.1-P	Field mustard	nucleus, plastid	42.25	61.72
CDY15256	Canola	nucleus, plastid	41.71	60.47
HORVU1Hr1G024140.1	Barley	plastid	67.38	60.29
TraesCS1D01G111100.1	Wheat	plastid	66.31	59.9
TraesCS5D01G143700.1	Wheat	plastid	63.64	59.2
TraesCS5A01G149100.1	Wheat	plastid	64.17	57.97
TraesCS1A01G107900.2	Wheat	nucleus, plastid	67.91	56.7
TraesCS1B01G130100.1	Wheat	plastid	66.84	53.65
CDX89953	Canola	nucleus, plastid	44.92	50.0
CDY71056	Canola	mitochondrion, plastid	42.78	47.62
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	28.34	41.09

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	EntrezGene:8086326	UniProt:C5XJT2	EnsemblPlants:EES00711
ProteinID:EES00711	ProteinID:EES00711.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006357	GO:GO:0006366
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009960	GO:GO:0009987	GO:GO:0046982	GO:GO:0048316	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF02269	PANTHER:PTHR11380	PANTHER:PTHR11380:SF5	EnsemblPlantsGene:SORBI_3003G155700	SUPFAM:SSF47113
unigene:Sbi.5442	InterPro:TFIID_TAF13	UniParc:UPI0001A8453F	RefSeq:XP_002455591.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:17111373..17114092

Molecular Weight (calculated)

19525.8 Da

IEP (calculated)

9.443

GRAVY (calculated)

-0.596

Length

187 amino acids

Sequence
(BLAST)

001: MQNPSGHHPA TAAPSSAPSK GKSSAPNPSG HHAATPAPSG TPSKGKSAAA QAAASGQGSS SHHHTAGGGG GGGGADASAT TLKRKRGVFQ KDLQHMMYGF
101: GDDPNPLPET VALVEDIVVE YVTDLVHKAQ NVASKRGKLL TEDFLYLIRK DLRKLHRATE LLSMNEELKQ ARKAFDVDEE TLATTNI

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.