Factsheet for Os01t0338100-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0680400-01
Os01t0846900-01
Os01t0858500-01
Os03t0603300-01
Os04t0654700-02
Os12t0574800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	Os01t0846900-01	AT1G17440.1	17340043
AT1G02680.1	Os04t0654700-02	AT1G71230.1	21798944
AT1G02680.1	Os01t0858500-01	AT3G10070.1	17340043
AT1G02680.1	Os01t0680400-01	AT4G20280.1	17340043
AT1G02680.1	Os03t0603300-01	AT4G34340.1	17340043
AT1G02680.1	Os12t0574800-02	AT4G34340.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040759_P002	Maize	cytosol	12.88	87.5
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	58.28	73.64
EES00711	Sorghum	plastid	80.98	70.59
Zm00001d040757_P002	Maize	plastid	78.53	69.19
Solyc02g078300.2.1	Tomato	nucleus	53.99	68.75
PGSC0003DMT400076353	Potato	nucleus	53.99	68.75
KRH31641	Soybean	nucleus, plastid	42.33	65.71
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	57.06	63.7
KRH31820	Soybean	nucleus, plastid	52.76	63.24
KRH31624	Soybean	nucleus, plastid	52.76	63.24
AT1G02680.1	Thale cress	plastid	46.63	60.32
CDY15437	Canola	plastid	47.24	60.16
TraesCS1D01G111100.1	Wheat	plastid	76.07	59.9
CDY15256	Canola	nucleus, plastid	47.24	59.69
Bra033338.1-P	Field mustard	nucleus, plastid	46.63	59.38
Bra030508.1-P	Field mustard	plastid	46.63	59.38
HORVU1Hr1G024140.1	Barley	plastid	75.46	58.85
TraesCS5D01G143700.1	Wheat	plastid	71.78	58.21
TraesCS5A01G149100.1	Wheat	plastid	71.78	56.52
TraesCS1A01G107900.2	Wheat	nucleus, plastid	76.07	55.36
TraesCS1B01G130100.1	Wheat	plastid	75.46	52.79
CDY71056	Canola	mitochondrion, plastid	47.24	45.83
CDX89953	Canola	nucleus, plastid	47.24	45.83
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	32.52	41.09

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	EntrezGene:9268703	UniProt:B9EW84	ProteinID:BAS71956.1
ProteinID:EEE54489.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003712
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006357	GO:GO:0006366	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009960	GO:GO:0009987	GO:GO:0046982	GO:GO:0048316	InterPro:Histone-fold	InterPro:IPR009072
EnsemblPlantsGene:Os01g0338100	EnsemblPlants:Os01t0338100-00	PFAM:PF02269	PANTHER:PTHR11380	PANTHER:PTHR11380:SF5	SUPFAM:SSF47113
InterPro:TFIID_TAF13	UniParc:UPI0001932A18	RefSeq:XP_015617807.1	SEG:seg	:	:

Description

Similar to Transcription initiation factor IID, 18kD subunit family protein. (Os01t0338100-00)

Coordinates

chr1:+:13291658..13294473

Molecular Weight (calculated)

17443.4 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.656

Length

163 amino acids

Sequence
(BLAST)

001: MQNPGGHHAS PASAAKSKSS TAAAASASGQ GSSHHHHHHH SGGGGGGGGG ADASATTLKR KRGVFQKDLQ HMMYGFGDDP NPLPETVALV EDIVVEYVTD
101: LVHKAQNVAS KRGKLLTEDF LYLIRKDVRK LHRATELLSM NEELKQARKA FDVNEETLAT NNE

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.