Factsheet for Solyc02g078300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g122020.2.1
Solyc04g077290.1.1
Solyc05g010570.2.1
Solyc05g018120.1.1
Solyc06g062900.2.1
Solyc06g073150.2.1
Solyc09g008150.1.1
Solyc09g009680.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT1G02680.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT1G02680.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT1G02680.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT1G02680.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT1G02680.1	Solyc05g010570.2.1	AT4G20280.1	17340043
AT1G02680.1	Solyc05g018120.1.1	AT4G20280.1	17340043
AT1G02680.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT1G02680.1	Solyc04g077290.1.1	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076353	Potato	nucleus	100.0	100.0
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	78.12	77.52
KRH31641	Soybean	nucleus, plastid	61.72	75.24
Zm00001d040759_P002	Maize	cytosol	14.06	75.0
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	84.38	73.97
KRH31820	Soybean	nucleus, plastid	76.56	72.06
KRH31624	Soybean	nucleus, plastid	76.56	72.06
Bra033338.1-P	Field mustard	nucleus, plastid	64.84	64.84
CDY15437	Canola	plastid	64.84	64.84
CDY15256	Canola	nucleus, plastid	64.84	64.34
Bra030508.1-P	Field mustard	plastid	64.06	64.06
AT1G02680.1	Thale cress	plastid	62.5	63.49
Os01t0338100-00	Rice	plastid	68.75	53.99
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	50.0	49.61
CDX89953	Canola	nucleus, plastid	64.84	49.4
CDY71056	Canola	mitochondrion, plastid	64.06	48.81
Zm00001d040757_P002	Maize	plastid	70.31	48.65
EES00711	Sorghum	plastid	69.53	47.59
TraesCS1D01G111100.1	Wheat	plastid	71.09	43.96
TraesCS5D01G143700.1	Wheat	plastid	68.75	43.78
HORVU1Hr1G024140.1	Barley	plastid	71.09	43.54
TraesCS5A01G149100.1	Wheat	plastid	69.53	43.0
TraesCS1A01G107900.2	Wheat	nucleus, plastid	71.09	40.62
TraesCS1B01G130100.1	Wheat	plastid	71.09	39.06

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006357
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4B954	PFAM:PF02269	PANTHER:PTHR11380	PANTHER:PTHR11380:SF5
SUPFAM:SSF47113	EnsemblPlantsGene:Solyc02g078300.2	EnsemblPlants:Solyc02g078300.2.1	InterPro:TFIID_TAF13	UniParc:UPI00027680DB	:

Description

No Description!

Coordinates

chr2:-:43043864..43047114

Molecular Weight (calculated)

14459.3 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.624

Length

128 amino acids

Sequence
(BLAST)

001: MNNSSAGPSS KARVGASQPS ESSLKRKRGM FQKDLQHMMY GFGDDSNPLP ETVSLVEDIV VDYVTDMVHK AQDIATKRGK LLTEDFLFLI RKDLPKLNRC
101: TELLSMNEEL KQARKAFEVD EEKLASHQ

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.