Factsheet for Solyc05g018120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078300.2.1
Solyc03g122020.2.1
Solyc06g036200.1.1
Solyc06g062900.2.1
Solyc09g009680.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	Solyc02g078300.2.1	AT1G02680.1	17340043
AT4G20280.1	Solyc06g036200.1.1	AT1G02680.1	17340043
AT4G20280.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT4G20280.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT4G20280.1	Solyc09g009680.2.1	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010570.2.1	Tomato	nucleus	80.95	100.0
PGSC0003DMT400050569	Potato	nucleus	98.57	98.57
VIT_19s0093g00470.t01	Wine grape	nucleus	65.24	69.19
GSMUA_Achr9P06160_001	Banana	nucleus	63.81	67.34
Os01t0680400-01	Rice	nucleus	63.33	63.03
EES01269	Sorghum	nucleus	61.9	62.2
KRH64870	Soybean	nucleus	58.1	60.4
TraesCS3D01G267500.1	Wheat	nucleus	61.9	60.19
AT4G20280.1	Thale cress	nucleus	60.0	60.0
TraesCS3A01G267300.1	Wheat	nucleus	61.43	59.72
CDX78982	Canola	nucleus	57.62	59.61
HORVU3Hr1G062710.1	Barley	nucleus	60.95	59.26
Bra013452.1-P	Field mustard	nucleus	57.14	59.11
CDY67613	Canola	nucleus	56.19	51.53
Zm00001d011605_P001	Maize	nucleus	61.43	47.08
CDY31444	Canola	nucleus	34.76	45.62
AT1G20000.1	Thale cress	nucleus, plastid	43.33	44.61

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	GO:GO:0003674	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006367	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0046982	GO:GO:0051123	GO:GO:1903506	GO:GO:1903508
InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4BZ67	PFAM:PF04719	PANTHER:PTHR13218	PANTHER:PTHR13218:SF14
SUPFAM:SSF47113	EnsemblPlantsGene:Solyc05g018120.1	EnsemblPlants:Solyc05g018120.1.1	InterPro:TAFII28	UniParc:UPI000276704E	SEG:seg

Description

No Description!

Coordinates

chr5:-:20042569..20043201

Molecular Weight (calculated)

23350.5 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.840

Length

210 amino acids

Sequence
(BLAST)

001: MKRSKDPFEA TFEEQDDSPP ESPAGTDENE GQDHGAVGVN MNEGDDVNTD SREKPSTSKA TSVSVSTAGP ISKPKEEDEE EEEESMDVQL GKLSSSSDPD
101: KLAKMQSILS QFTEEQMSRY ESFRRSGFQK SNMKRLLTNI TGSAKISIPM TIVVSGIAKM FVGELIETAK MVMAERKDTG PIRPCHIREA YRRLKLEGKI
201: PKKSVPRLFR

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.