Factsheet for Os01t0680400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0338100-00
Os01t0846900-01
Os01t0858500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	Os01t0338100-00	AT1G02680.1	17340043
AT4G20280.1	Os01t0846900-01	AT1G17440.1	17340043
AT4G20280.1	Os01t0858500-01	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01269	Sorghum	nucleus	75.83	76.56
TraesCS3D01G267500.1	Wheat	nucleus	75.36	73.61
TraesCS3A01G267300.1	Wheat	nucleus	75.36	73.61
HORVU3Hr1G062710.1	Barley	nucleus	74.88	73.15
GSMUA_Achr9P06160_001	Banana	nucleus	63.98	67.84
Solyc05g010570.2.1	Tomato	nucleus	53.55	66.47
VIT_19s0093g00470.t01	Wine grape	nucleus	59.72	63.64
Solyc05g018120.1.1	Tomato	nucleus	63.03	63.33
PGSC0003DMT400050569	Potato	nucleus	62.56	62.86
KRH64870	Soybean	nucleus	59.24	61.88
CDX78982	Canola	nucleus	58.77	61.08
Bra013452.1-P	Field mustard	nucleus	58.29	60.59
AT4G20280.1	Thale cress	nucleus	53.55	53.81
Zm00001d011605_P001	Maize	nucleus	68.72	52.92
CDY67613	Canola	nucleus	56.87	52.4
CDY31444	Canola	nucleus	35.07	46.25
AT1G20000.1	Thale cress	nucleus, plastid	42.18	43.63

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	EntrezGene:4325286	EMBL:AK067914	ProteinID:BAD73490.1	ProteinID:BAD73746.1
ProteinID:BAF05786.2	ProteinID:BAS73696.1	ProteinID:EEE55179.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003713
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006367
GO:GO:0006412	GO:GO:0006413	GO:GO:0008134	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0046982	GO:GO:0051123
GO:GO:1903506	GO:GO:1903508	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os01g0680400	EnsemblPlants:Os01t0680400-01
PFAM:PF04719	PANTHER:PTHR13218	PANTHER:PTHR13218:SF14	UniProt:Q5QMA1	SUPFAM:SSF47113	InterPro:TAFII28
UniParc:UPI000048DFB1	RefSeq:XP_015647178.1	SEG:seg	:	:	:

Description

Histone-fold domain containing protein. (Os01t0680400-01)

Coordinates

chr1:+:28009051..28011750

Molecular Weight (calculated)

23066.3 Da

IEP (calculated)

5.934

GRAVY (calculated)

-0.723

Length

211 amino acids

Sequence
(BLAST)

001: MKDPFEAAVE EQESPPESPA ANEEDAAGAP EGYDGASGSR GPPLRLPPSR AAPSGSGGAA AAAARGKVVR VQKEQQEEED DEEDHMEVDL DKLPSGTSDP
101: DKLAKMNAIL SQFTEDQMNR YESFRRSGFQ KSNMKKLLAS ITGSQKISLP TTIVVSGIAK MFVGELVETA RIVMTERKDS GPVRPCHIRE AYRRLKLEGK
201: IPRRTVPRLF R

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.