Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78982 | Canola | nucleus | 60.0 | 47.29 |
| AT4G20280.1 | Thale cress | nucleus | 58.75 | 44.76 |
| CDY67613 | Canola | nucleus | 60.0 | 41.92 |
| VIT_19s0093g00470.t01 | Wine grape | nucleus | 51.88 | 41.92 |
| GSMUA_Achr9P06160_001 | Banana | nucleus | 48.75 | 39.2 |
| KRH64870 | Soybean | nucleus | 47.5 | 37.62 |
| Os01t0680400-01 | Rice | nucleus | 46.25 | 35.07 |
| PGSC0003DMT400050569 | Potato | nucleus | 45.62 | 34.76 |
| Solyc05g018120.1.1 | Tomato | nucleus | 45.62 | 34.76 |
| Solyc05g010570.2.1 | Tomato | nucleus | 35.62 | 33.53 |
| HORVU3Hr1G062710.1 | Barley | nucleus | 44.38 | 32.87 |
| TraesCS3A01G267300.1 | Wheat | nucleus | 44.38 | 32.87 |
| EES01269 | Sorghum | nucleus | 42.5 | 32.54 |
| TraesCS3D01G267500.1 | Wheat | nucleus | 43.75 | 32.41 |
| Zm00001d011605_P001 | Maize | nucleus | 42.5 | 24.82 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.11 | GO:A0A078H1Y4 | UniProt:A0A078H1Y4 | EnsemblPlants:CDY31444 | ProteinID:CDY31444 |
| ProteinID:CDY31444.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006367 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00047684001 | InterPro:Histone-fold |
| InterPro:IPR009072 | PFAM:PF04719 | PANTHER:PTHR13218 | PANTHER:PTHR13218:SF14 | SUPFAM:SSF47113 | InterPro:TAFII28 |
| UniParc:UPI0004EDAD3C | SEG:seg | : | : | : | : |
Description
BnaC03g63800DBnaC03g63800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1Y4]
Coordinates
chrLK032272:-:229669..231723
Molecular Weight (calculated)
17948.7 Da
IEP (calculated)
4.100
GRAVY (calculated)
-0.959
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHSKDPFEA AIEEEQEEPP PESPVSGGGG GGGGNDDAIV EIDQTPEERK RKDEDEDEDE EEEENMEAEP ELTKYPTTAD PAKMATMQVI FSQFTEDQMS
101: RYESFSRSAL QKGNMRKVTG SQKISMPITI VTCGIAKIFV GELVETGKDW RKFQFLTYNN
101: RYESFSRSAL QKGNMRKVTG SQKISMPITI VTCGIAKIFV GELVETGKDW RKFQFLTYNN
001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
Arabidopsis Description
TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.